Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006562.1 Kokia drynarioides strain JFW-HI SEQ_121148, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8165
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36


Found at i:8028 original size:29 final size:30

Alignment explanation


    Indices: 7991--8049  Score: 75
    Period size: 29  Copynumber: 2.0  Consensus size: 30

       7981 TATGGTTTAA

                                          
       7991 TGTGCAATTGTATACAAG-AACTTTGATTT
          1 TGTGCAATTGTATACAAGAAACTTTGATTT

                *    *      *    *        
       8020 TGTGTAATTTTATACATGAAATTTTGATTT
          1 TGTGCAATTGTATACAAGAAACTTTGATTT

       8050 GATCCAATTC


Statistics
Matches: 25,  Mismatches: 4, Indels: 1
        0.83            0.13        0.03

Matches are distributed among these distances:
  29   15  0.60
  30   10  0.40

ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47


Consensus pattern (30 bp):   
TGTGCAATTGTATACAAGAAACTTTGATTT
Done.