Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006564.1 Kokia drynarioides strain JFW-HI SEQ_121150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 878

Length: 1464
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.36


Found at i:1448 original size:18 final size:18

Alignment explanation


    Indices: 1425--1461  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1415 TTTGTGAACA

                              
       1425 AAATTGAAAGTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

                     *        
       1443 AAATTGAAATTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

             
       1461 A
          1 A

       1462 TAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24


Consensus pattern (18 bp):   
AAATTGAAAGTGAAAGTG

Found at i:1450 original size:12 final size:12

Alignment explanation


    Indices: 1425--1461  Score: 56
    Period size: 12  Copynumber: 3.1  Consensus size: 12

       1415 TTTGTGAACA

                        
       1425 AAATTGAAAGTG
          1 AAATTGAAAGTG

               *     *  
       1437 AAAGTGAAATTG
          1 AAATTGAAAGTG

                        
       1449 AAATTGAAAGTG
          1 AAATTGAAAGTG

             
       1461 A
          1 A

       1462 TAT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24


Consensus pattern (12 bp):   
AAATTGAAAGTG
Done.