Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006567.1 Kokia drynarioides strain JFW-HI SEQ_121153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21259
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 3 characters in sequence are not A, C, G, or T
Found at i:1159 original size:20 final size:20
Alignment explanation
Indices: 1134--1182 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
1124 ATGCACATGA
1134 GTATCGATATTTTTAAGA-AG
1 GTATCGATATTTTTAA-ACAG
*
1154 GTATCGATATTTTTAAACTG
1 GTATCGATATTTTTAAACAG
1174 GTATCGATA
1 GTATCGATA
1183 CCAAATCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (20 bp):
GTATCGATATTTTTAAACAG
Found at i:2910 original size:40 final size:40
Alignment explanation
Indices: 2863--2959 Score: 119
Period size: 39 Copynumber: 2.5 Consensus size: 40
2853 TTTTAAAAGA
2863 GGGTATCAATATTTTTCAAATATTATC-AGTA-CTTAAATAT
1 GGGTATCAATATTTTTCAAATATTATCGA-TACCTTAAA-AT
* ** *
2903 GGGTATCAA-AATTTTCAAATATTATCGATACCTTTGAGT
1 GGGTATCAATATTTTTCAAATATTATCGATACCTTAAAAT
2942 GGGTATCAATATTTTTCA
1 GGGTATCAATATTTTTCA
2960 GACGTTTCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
39 28 0.57
40 21 0.43
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (40 bp):
GGGTATCAATATTTTTCAAATATTATCGATACCTTAAAAT
Found at i:5552 original size:49 final size:49
Alignment explanation
Indices: 5484--5726 Score: 182
Period size: 49 Copynumber: 4.9 Consensus size: 49
5474 TCTAAGGAAT
* *
5484 CAGGTTTGCCGTTGCGGTCGTAACCTTTCCTTTCAAATCTTCATGGTAC
1 CAGGTTCGCCGTTACGGTCGTAACCTTTCCTTTCAAATCTTCATGGTAC
* * ** * * * * *
5533 CAGGTTCGCCATTGCGGTCGTAACCTTTCCCATCATACCTTTTAAGATAC
1 CAGGTTCGCCGTTACGGTCGTAACCTTTCCTTTCAAATC-TTCATGGTAC
* * * * *
5583 CGGGTTCGTCATTATGGTCGTAACCTCTCCCTTT-AAATCTTCATGGTAC
1 CAGGTTCGCCGTTACGGTCGTAACCT-TTCCTTTCAAATCTTCATGGTAC
* * ** ** * * *
5632 TAGGTTCGTCGTTACGACCGTAACCTTTCCCATCACATCTTCTAAGGTAT
1 CAGGTTCGCCGTTACGGTCGTAACCTTTCCTTTCAAATCTTC-ATGGTAC
* * * **
5682 CGGGTTCTCTGTTACGGTCGTAATATTTCCTTTCAAATCTTCATG
1 CAGGTTCGCCGTTACGGTCGTAACCTTTCCTTTCAAATCTTCATG
5727 TCAGGTTCAC
Statistics
Matches: 144, Mismatches: 46, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
48 4 0.03
49 69 0.48
50 67 0.47
51 4 0.03
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (49 bp):
CAGGTTCGCCGTTACGGTCGTAACCTTTCCTTTCAAATCTTCATGGTAC
Found at i:5602 original size:99 final size:99
Alignment explanation
Indices: 5498--5726 Score: 282
Period size: 99 Copynumber: 2.3 Consensus size: 99
5488 TTTGCCGTTG
* **
5498 CGGTCGTAACCTTTCCTTTCAAATCTTCATGGTACCAGGTTCGCCATTGCGGTCGTAACCTTTCC
1 CGGTCGTAACCTTTCCTTTCAAATCTTCATGGTACCAGGTTCGCCATTACGACCGTAACCTTTCC
* *
5563 CATCATACCTTTTAAGATACCGGGTTCGTC-ATTA
66 CATCACACCTTCTAAGATACCGGGTTC-TCTATTA
* * * * *
5597 TGGTCGTAACCTCTCCCTTT-AAATCTTCATGGTACTAGGTTCGTCGTTACGACCGTAACCTTTC
1 CGGTCGTAACCT-TTCCTTTCAAATCTTCATGGTACCAGGTTCGCCATTACGACCGTAACCTTTC
* * * *
5661 CCATCACATCTTCTAAGGTATCGGGTTCTCTGTTA
65 CCATCACACCTTCTAAGATACCGGGTTCTCTATTA
**
5696 CGGTCGTAATATTTCCTTTCAAATCTTCATG
1 CGGTCGTAACCTTTCCTTTCAAATCTTCATG
5727 TCAGGTTCAC
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
98 8 0.07
99 95 0.87
100 6 0.06
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (99 bp):
CGGTCGTAACCTTTCCTTTCAAATCTTCATGGTACCAGGTTCGCCATTACGACCGTAACCTTTCC
CATCACACCTTCTAAGATACCGGGTTCTCTATTA
Found at i:5704 original size:50 final size:49
Alignment explanation
Indices: 5460--5723 Score: 174
Period size: 50 Copynumber: 5.3 Consensus size: 49
5450 GTCTCAATCC
* * * *
5460 TTCCCATCACATCTTCTAAGGAATCAGGTT-TGCCGTTGCGGTCGTAACCT
1 TTCCCATCAAATCTTCTAAGGTACCAGGTTCT--CGTTACGGTCGTAACCT
** * * * *
5510 TTCCTTTCAAATCTTC-ATGGTACCAGGTTCGCCATTGCGGTCGTAACCT
1 TTCCCATCAAATCTTCTAAGGTACCAGGTTC-TCGTTACGGTCGTAACCT
* * * * * * *
5559 TTCCCATCATACCTTTTAAGATACCGGGTTCGTCATTATGGTCGTAACCT
1 TTCCCATCAAATCTTCTAAGGTACCAGGTTC-TCGTTACGGTCGTAACCT
* * * * * **
5609 CTCCCTTTAAATCTTC-ATGGTACTAGGTTCGTCGTTACGACCGTAACCT
1 TTCCCATCAAATCTTCTAAGGTACCAGGTTC-TCGTTACGGTCGTAACCT
* * * **
5658 TTCCCATCACATCTTCTAAGGTATCGGGTTCTCTGTTACGGTCGTAATAT
1 TTCCCATCAAATCTTCTAAGGTACCAGGTTCTC-GTTACGGTCGTAACCT
**
5708 TTCCTTTCAAATCTTC
1 TTCCCATCAAATCTTC
5724 ATGTCAGGTT
Statistics
Matches: 161, Mismatches: 48, Indels: 10
0.74 0.22 0.05
Matches are distributed among these distances:
49 76 0.47
50 85 0.53
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (49 bp):
TTCCCATCAAATCTTCTAAGGTACCAGGTTCTCGTTACGGTCGTAACCT
Found at i:10281 original size:11 final size:10
Alignment explanation
Indices: 10254--10287 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
10244 TTTACCCACG
10254 AAAAATACAA
1 AAAAATACAA
10264 AAAAATACAA
1 AAAAATACAA
*
10274 AATCAATACAA
1 AA-AAATACAA
10285 AAA
1 AAA
10288 GGAGCATTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (10 bp):
AAAAATACAA
Found at i:10551 original size:12 final size:12
Alignment explanation
Indices: 10534--10558 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10524 TCTTCTTTTT
10534 TGAAATAAAAAA
1 TGAAATAAAAAA
10546 TGAAATAAAAAA
1 TGAAATAAAAAA
10558 T
1 T
10559 CTACTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (12 bp):
TGAAATAAAAAA
Found at i:11381 original size:30 final size:29
Alignment explanation
Indices: 11336--11606 Score: 312
Period size: 30 Copynumber: 9.1 Consensus size: 29
11326 CTCAAGAGGT
*
11336 CCCTAAACTTTTCTAAAATTACATTTTAA
1 CCCTAAACTTTTCCAAAATTACATTTTAA
* * * *
11365 TCCCCAAACCTTTCTAAAATCACATTTTAAA
1 -CCCTAAACTTTTCCAAAATTACATTTT-AA
11396 CCC-AAACTTTTCCAAAATTACATTTTAAA
1 CCCTAAACTTTTCCAAAATTACATTTT-AA
* * * *
11425 ACCTAAATTTTTCAAAAATTACATTTTGA
1 CCCTAAACTTTTCCAAAATTACATTTTAA
11454 CACCTAAACTTTTCCAAAATTACATTTTAA
1 C-CCTAAACTTTTCCAAAATTACATTTTAA
11484 CCCCTAAACTTTTCCAAAATTACATTTTAA
1 -CCCTAAACTTTTCCAAAATTACATTTTAA
* *
11514 CTCCTAAATTTTTCCAAAATTACATTTTGA
1 C-CCTAAACTTTTCCAAAATTACATTTTAA
* *
11544 CCTTGAAA-ATTTCCAAAATTACATTTTAA
1 CCCT-AAACTTTTCCAAAATTACATTTTAA
* * *
11573 CCCCTATACTTTTCCAAAATCATATTTTAA
1 -CCCTAAACTTTTCCAAAATTACATTTTAA
11603 CCCT
1 CCCT
11607 CGAGCTTTTT
Statistics
Matches: 209, Mismatches: 24, Indels: 17
0.84 0.10 0.07
Matches are distributed among these distances:
29 54 0.26
30 152 0.73
31 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.01, T:0.38
Consensus pattern (29 bp):
CCCTAAACTTTTCCAAAATTACATTTTAA
Found at i:11482 original size:60 final size:60
Alignment explanation
Indices: 11337--11602 Score: 297
Period size: 59 Copynumber: 4.5 Consensus size: 60
11327 TCAAGAGGTC
* ** * * * *
11337 CCTAAACTTTTCTAAAATTACATTTTAATCCCCAAACCTTTCTAAAATCACATTTTAA-A
1 CCTAAACTTTTCCAAAATTACATTTTAAAACCTAAACTTTTCCAAAATTACATTTTAACA
* * * *
11396 CCCAAACTTTTCCAAAATTACATTTTAAAACCTAAATTTTTCAAAAATTACATTTTGACA
1 CCTAAACTTTTCCAAAATTACATTTTAAAACCTAAACTTTTCCAAAATTACATTTTAACA
** *
11456 CCTAAACTTTTCCAAAATTACATTTTAACCCCTAAACTTTTCCAAAATTACATTTTAACT
1 CCTAAACTTTTCCAAAATTACATTTTAAAACCTAAACTTTTCCAAAATTACATTTTAACA
* * * *
11516 CCTAAATTTTTCCAAAATTACATTTT--GACCTTGAAA-ATTTCCAAAATTACATTTTAACC
1 CCTAAACTTTTCCAAAATTACATTTTAAAACC-T-AAACTTTTCCAAAATTACATTTTAACA
* * *
11575 CCTATACTTTTCCAAAATCATATTTTAA
1 CCTAAACTTTTCCAAAATTACATTTTAA
11603 CCCTCGAGCT
Statistics
Matches: 176, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
58 2 0.01
59 92 0.52
60 82 0.47
ACGTcount: A:0.38, C:0.22, G:0.01, T:0.38
Consensus pattern (60 bp):
CCTAAACTTTTCCAAAATTACATTTTAAAACCTAAACTTTTCCAAAATTACATTTTAACA
Found at i:11603 original size:89 final size:90
Alignment explanation
Indices: 11337--11603 Score: 344
Period size: 89 Copynumber: 3.0 Consensus size: 90
11327 TCAAGAGGTC
* * * * * * * *
11337 CCTAAACTTTTCTAAAATTACATTTTAATC-CCCAAACCTTTCTAAAATCACATTTTAAACCC-A
1 CCTAAATTTTTCAAAAATTACATTTTGA-CACCTAAACATTTCCAAAATTACATTTTAACCCCTA
*
11400 AACTTTTCCAAAATTACATTTTAAAA
65 AACTTTTCCAAAATTACATTTTAACA
*
11426 CCTAAATTTTTCAAAAATTACATTTTGACACCTAAACTTTTCCAAAATTACATTTTAACCCCTAA
1 CCTAAATTTTTCAAAAATTACATTTTGACACCTAAACATTTCCAAAATTACATTTTAACCCCTAA
*
11491 ACTTTTCCAAAATTACATTTTAACT
66 ACTTTTCCAAAATTACATTTTAACA
* *
11516 CCTAAATTTTTCCAAAATTACATTTTGAC-CTTGAAA-ATTTCCAAAATTACATTTTAACCCCTA
1 CCTAAATTTTTCAAAAATTACATTTTGACACCT-AAACATTTCCAAAATTACATTTTAACCCCTA
* * *
11579 TACTTTTCCAAAATCATATTTTAAC
65 AACTTTTCCAAAATTACATTTTAAC
11604 CCTCGAGCTT
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
88 1 0.01
89 102 0.64
90 56 0.35
ACGTcount: A:0.38, C:0.22, G:0.01, T:0.38
Consensus pattern (90 bp):
CCTAAATTTTTCAAAAATTACATTTTGACACCTAAACATTTCCAAAATTACATTTTAACCCCTAA
ACTTTTCCAAAATTACATTTTAACA
Found at i:16679 original size:15 final size:16
Alignment explanation
Indices: 16654--16685 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
16644 TTTCACCCAA
16654 AAAAGAAAAAAAAAGG
1 AAAAGAAAAAAAAAGG
16670 AAAA-AAAAAAAAAGG
1 AAAAGAAAAAAAAAGG
16685 A
1 A
16686 GANGTCGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAAAAGG
Found at i:17773 original size:49 final size:49
Alignment explanation
Indices: 17696--18360 Score: 327
Period size: 49 Copynumber: 13.6 Consensus size: 49
17686 TTTTATAGGT
* *
17696 TTCATTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGATGAA
1 TTCAGTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* * * **
17745 TTCAATACCACGAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGTGAA
1 TTCAGTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* * * * *
17794 CCTT--GTACCTA-AAAAACATGAAGGGAAATATTTAAGTCACAAC-AGCGAA
1 --TTCAGTACC-ACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGA-CGAA
* * * * *
17843 TTTAGTACCATGAAGTTATGGAGGGAAAGGTTTAAGTCGCAAC-AGCGAA
1 TTCAGTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGA-CGAA
* * **
17892 CCTT--GTACCTTA-GAA-ACATGAAGGGAAAGATTTAAG-CCCAACGGTGAA
1 --TTCAGTACC--ACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* * **
17940 TTCAGTACCACGAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGTGAA
1 TTCAGTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* * * * *
17989 CCTT--GTACCTCAAAAACATGAAGGGAAAGATTTAAGTCACAAC-AGCGAA
1 --TTCAGTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGA-CGAA
* * * *
18038 TTCAGTACCAAGAAGATATGGAGGGAAAGGTTTAAGTCGCAACGGCGAA
1 TTCAGTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* * * * *
18087 CCTT--GTACCTCAGAA-ACATGAAGGGAAATATTTAAGCCGCAACGGCGAA
1 --TTCAGTACCAC-GAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* * *
18136 -TCTAGTACCACAAAGATATGGAGGGAAATG-TTTAAGTCGCAACGACAAA
1 TTC-AGTACCACGAAGATATGAAGGGAAA-GATTTAAGTCGCAACGACGAA
* * ** * * *
18185 CCTT--GTACCTCAGAA-ACATGAAGAAAAAGATTTAAGCCGCAATGGCGAA
1 --TTCAGTACCAC-GAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* * * * * ** * * * *
18234 TCCTGTACCACGAGGACATGGAGGGATTGGTTTAAGTCACAATGGCGAA
1 TTCAGTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* * * * * *
18283 CCTT--GTACCTC-AAAAGCATGAAGGGAAAGATTTAAGCCGCAAAGGCGAA
1 --TTCAGTACCACGAAGA-TATGAAGGGAAAGATTTAAGTCGCAACGACGAA
* *
18332 -TCTAGTGCCACGAAGATATGGAGGGAAAG
1 TTC-AGTACCACGAAGATATGAAGGGAAAG
18361 GTTACGACCG
Statistics
Matches: 467, Mismatches: 103, Indels: 92
0.71 0.16 0.14
Matches are distributed among these distances:
46 5 0.01
47 8 0.02
48 39 0.08
49 392 0.84
50 12 0.03
51 10 0.02
52 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (49 bp):
TTCAGTACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGACGAA
Found at i:17882 original size:98 final size:98
Alignment explanation
Indices: 17713--18363 Score: 842
Period size: 98 Copynumber: 6.7 Consensus size: 98
17703 CCACGAAGAT
* * * *
17713 ATGAAGGGAAAGATTTAAGTCGCAAC-GATGAATTCAATACCACGAAGATATGGAGGGAAAGGTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAG-CGAATTTAGTACCACGAAGATATGGAGGGAAAGGTT
* *
17777 TAAGTCGCAACGGTGAACCTTGTACCTAAAAAAC
65 TAAGTCGCAACGGCGAACCTTGTACCTCAAAAAC
* * * * *
17811 ATGAAGGGAAATATTTAAGTCACAACAGCGAATTTAGTACCATGAAGTTATGGAGGGAAAGGTTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATTTAGTACCACGAAGATATGGAGGGAAAGGTTT
* * *
17876 AAGTCGCAACAGCGAACCTTGTACCTTAGAAAC
66 AAGTCGCAACGGCGAACCTTGTACCTCAAAAAC
* * *
17909 ATGAAGGGAAAGATTTAAGCC-CAACGGTGAATTCAGTACCACGAAGATATGGAGGGAAAGGTTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATTTAGTACCACGAAGATATGGAGGGAAAGGTTT
*
17973 AAGTCGCAACGGTGAACCTTGTACCTCAAAAAC
66 AAGTCGCAACGGCGAACCTTGTACCTCAAAAAC
* * * *
18006 ATGAAGGGAAAGATTTAAGTCACAACAGCGAATTCAGTACCAAGAAGATATGGAGGGAAAGGTTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATTTAGTACCACGAAGATATGGAGGGAAAGGTTT
*
18071 AAGTCGCAACGGCGAACCTTGTACCTCAGAAAC
66 AAGTCGCAACGGCGAACCTTGTACCTCAAAAAC
* * * * *
18104 ATGAAGGGAAATATTTAAGCCGCAACGGCGAATCTAGTACCACAAAGATATGGAGGGAAATGTTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATTTAGTACCACGAAGATATGGAGGGAAAGGTTT
* * *
18169 AAGTCGCAACGACAAACCTTGTACCTCAGAAAC
66 AAGTCGCAACGGCGAACCTTGTACCTCAAAAAC
** ** * * * **
18202 ATGAAGAAAAAGATTTAAGCCGCAATGGCGAATCCT-GTACCACGAGGACATGGAGGGATTGGTT
1 ATGAAGGGAAAGATTTAAGCCGCAACAGCGAAT-TTAGTACCACGAAGATATGGAGGGAAAGGTT
* * *
18266 TAAGTCACAATGGCGAACCTTGTACCTCAAAAGC
65 TAAGTCGCAACGGCGAACCTTGTACCTCAAAAAC
* *
18300 ATGAAGGGAAAGATTTAAGCCGCAA-AGGCGAATCTAGTGCCACGAAGATATGGAGGGAAAGGTT
1 ATGAAGGGAAAGATTTAAGCCGCAACA-GCGAATTTAGTACCACGAAGATATGGAGGGAAAGGTT
18364 ACGACCGCAA
Statistics
Matches: 485, Mismatches: 63, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
97 89 0.18
98 393 0.81
99 3 0.01
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (98 bp):
ATGAAGGGAAAGATTTAAGCCGCAACAGCGAATTTAGTACCACGAAGATATGGAGGGAAAGGTTT
AAGTCGCAACGGCGAACCTTGTACCTCAAAAAC
Found at i:21076 original size:29 final size:30
Alignment explanation
Indices: 20752--21133 Score: 406
Period size: 30 Copynumber: 12.9 Consensus size: 30
20742 CTCAAGAGGT
*
20752 CCCC-AAACTTTT-TAAAATTACATTTTAA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
* *
20780 TCCC-AAACCATTTT--AAAATCACATTTTAA
1 CCCCTAAA-C-TTTTCCAAAATTACATTTTAA
* * *
20809 ACCTTAAACTTTTTCAAAATTACATTTTAA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
** *
20839 CCTTTAAACTTTTCCAAAATTATATTTTAA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
*
20869 -CCCTCAAACTTTTCCAAAATTACCTTTTAA
1 CCCCT-AAACTTTTCCAAAATTACATTTTAA
*
20899 CCCCTAAACTTTTCCAAAATTACATTTTTA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
** * *
20929 CCCCTAAACTTTTATAAAAATACATTTTTA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
* * *
20959 CCCTTATACTTTTCCAAAATTACATTTTGA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
*
20989 CCCCTAAAC-TTTCCAAAATTACATTTTGA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
21018 CCCCT--ACTCTTTCCAAAATTACATTTTAA
1 CCCCTAAACT-TTTCCAAAATTACATTTTAA
21047 CCCCTAAACTTTTCCAAAA-TACATTTTAA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
* * ** *
21076 CCCTTGATTTTTTCCAAAATCACATTTTAA
1 CCCCTAAACTTTTCCAAAATTACATTTTAA
** * *
21106 CCCCCGAGCTTTTCCAAAATTTCATTTT
1 CCCCTAAACTTTTCCAAAATTACATTTT
21134 CATCTAAAGT
Statistics
Matches: 304, Mismatches: 38, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
27 2 0.01
28 10 0.03
29 94 0.31
30 191 0.63
31 7 0.02
ACGTcount: A:0.35, C:0.25, G:0.01, T:0.40
Consensus pattern (30 bp):
CCCCTAAACTTTTCCAAAATTACATTTTAA
Done.