Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006569.1 Kokia drynarioides strain JFW-HI SEQ_121155, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6614
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32


Found at i:680 original size:13 final size:13

Alignment explanation


    Indices: 662--687  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        652 TGAGGGTTTT

                         
        662 TGGGAAAAGTAAA
          1 TGGGAAAAGTAAA

                         
        675 TGGGAAAAGTAAA
          1 TGGGAAAAGTAAA

        688 ATTTTGGAGG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.00, G:0.31, T:0.15


Consensus pattern (13 bp):   
TGGGAAAAGTAAA
Done.