Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006571.1 Kokia drynarioides strain JFW-HI SEQ_121157, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14213
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35

Warning! 111 characters in sequence are not A, C, G, or T


Found at i:660 original size:20 final size:20

Alignment explanation


    Indices: 614--660  Score: 60
    Period size: 21  Copynumber: 2.4  Consensus size: 20

        604 ATTACATGTG

                                
        614 AAAAT-ATATAATAAAATAA
          1 AAAATAATATAATAAAATAA

                        *    *   
        633 ATAAATAATATATTAAATTAA
          1 A-AAATAATATAATAAAATAA

                   
        654 AAAATAA
          1 AAAATAA

        661 CTCTTAATTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  19    1  0.04
  20   10  0.42
  21   13  0.54

ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30


Consensus pattern (20 bp):   
AAAATAATATAATAAAATAA

Found at i:14013 original size:2 final size:2

Alignment explanation


    Indices: 14006--14035  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

      13996 GTTTTTGTGA

                                                        
      14006 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      14036 TTTTTTTATA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:14085 original size:16 final size:15

Alignment explanation


    Indices: 14066--14095  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

      14056 AAAGAATTTT

                            
      14066 AAATTATAAGATGAAC
          1 AAATTATAA-ATGAAC

                          
      14082 AAATTATAAATGAA
          1 AAATTATAAATGAA

      14096 AAGTATGGTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    5  0.36
  16    9  0.64

ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27


Consensus pattern (15 bp):   
AAATTATAAATGAAC
Done.