Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006575.1 Kokia drynarioides strain JFW-HI SEQ_121161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3001
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26


Found at i:687 original size:14 final size:14

Alignment explanation


    Indices: 668--695  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        658 TTGGCACCAC

                          
        668 CCTGCAGAACACAT
          1 CCTGCAGAACACAT

                          
        682 CCTGCAGAACACAT
          1 CCTGCAGAACACAT

        696 TCATTAAAGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14


Consensus pattern (14 bp):   
CCTGCAGAACACAT
Done.