Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000658.1 Kokia drynarioides strain JFW-HI SEQ_111639, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2112
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36


Found at i:933 original size:17 final size:18

Alignment explanation


    Indices: 911--944  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        901 ATAACAATTA

                              
        911 TGAAGATTTTGG-ATATG
          1 TGAAGATTTTGGCATATG

                             
        928 TGAAGATTTTGGCATAT
          1 TGAAGATTTTGGCATAT

        945 TCCCCGAAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   12  0.75
  18    4  0.25

ACGTcount: A:0.29, C:0.03, G:0.26, T:0.41


Consensus pattern (18 bp):   
TGAAGATTTTGGCATATG
Done.