Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006580.1 Kokia drynarioides strain JFW-HI SEQ_121167, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6800
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1738 original size:26 final size:26

Alignment explanation


    Indices: 1706--1756  Score: 75
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1696 TGACTCCAAA

                     *        *       
       1706 TTTAAAGTTTAAAATCTGTTTCAATT
          1 TTTAAAGTTCAAAATCTGGTTCAATT

                           *         
       1732 TTTAAAGTTCAAAATTTGGTTCAAT
          1 TTTAAAGTTCAAAATCTGGTTCAAT

       1757 CTTGATGAAA


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.35, C:0.08, G:0.10, T:0.47


Consensus pattern (26 bp):   
TTTAAAGTTCAAAATCTGGTTCAATT

Found at i:5615 original size:25 final size:24

Alignment explanation


    Indices: 5556--5615  Score: 59
    Period size: 25  Copynumber: 2.5  Consensus size: 24

       5546 TGTAGTGTTG

                *         *         
       5556 AAATAGCTTTTAATTAATATAATT
          1 AAATTGCTTTTAATAAATATAATT

                  *               *  
       5580 AAATTGATTTTAAATAAATATACTT
          1 AAATTGCTTTT-AATAAATATAATT

                        
       5605 ATAA-TGCTTTT
          1 A-AATTGCTTTT

       5616 CTTTTAAATT


Statistics
Matches: 29,  Mismatches: 5, Indels: 3
        0.78            0.14        0.08

Matches are distributed among these distances:
  24    9  0.31
  25   18  0.62
  26    2  0.07

ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47


Consensus pattern (24 bp):   
AAATTGCTTTTAATAAATATAATT
Done.