Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006584.1 Kokia drynarioides strain JFW-HI SEQ_121172, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12200
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:5216 original size:46 final size:46

Alignment explanation


    Indices: 5164--5256  Score: 186
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       5154 ATAGGATTAT

                                                          
       5164 AACCATGGAAGTCGATAACATTCTGGTCCAAAACTAGTACCAAGTA
          1 AACCATGGAAGTCGATAACATTCTGGTCCAAAACTAGTACCAAGTA

                                                          
       5210 AACCATGGAAGTCGATAACATTCTGGTCCAAAACTAGTACCAAGTA
          1 AACCATGGAAGTCGATAACATTCTGGTCCAAAACTAGTACCAAGTA

             
       5256 A
          1 A

       5257 TTTAAGTTCC


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   47  1.00

ACGTcount: A:0.40, C:0.22, G:0.17, T:0.22


Consensus pattern (46 bp):   
AACCATGGAAGTCGATAACATTCTGGTCCAAAACTAGTACCAAGTA
Done.