Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006586.1 Kokia drynarioides strain JFW-HI SEQ_121174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 813

Length: 1356
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39


Found at i:436 original size:61 final size:61

Alignment explanation


    Indices: 341--463  Score: 246
    Period size: 61  Copynumber: 2.0  Consensus size: 61

        331 GTCGTGAGGA

                                                                         
        341 TTGCGTTACTTCTTGGTTTTGGTCATAAAGCAATAATAATGTAAGTTTCGTCGTTGATTTT
          1 TTGCGTTACTTCTTGGTTTTGGTCATAAAGCAATAATAATGTAAGTTTCGTCGTTGATTTT

                                                                         
        402 TTGCGTTACTTCTTGGTTTTGGTCATAAAGCAATAATAATGTAAGTTTCGTCGTTGATTTT
          1 TTGCGTTACTTCTTGGTTTTGGTCATAAAGCAATAATAATGTAAGTTTCGTCGTTGATTTT

             
        463 T
          1 T

        464 CTGTTATTGT


Statistics
Matches: 62,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  61   62  1.00

ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46


Consensus pattern (61 bp):   
TTGCGTTACTTCTTGGTTTTGGTCATAAAGCAATAATAATGTAAGTTTCGTCGTTGATTTT
Done.