genome.fa.s659.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000659.1 Kokia drynarioides strain JFW-HI SEQ_111641, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82432

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5031--5080	14	3.6	13	78	10	55	54	4	0	42	1.19
6789--6830	20	2.0	21	86	4	59	76	7	0	16	1.00
25600--25662	33	1.9	33	90	0	99	41	0	1	57	1.08
25960--26002	21	2.1	20	82	4	50	34	16	20	27	1.94
29189--29234	23	2.0	23	83	8	58	34	6	2	56	1.37
29987--30024	18	2.1	18	90	9	60	26	10	13	50	1.73
30742--30775	14	2.4	14	90	0	50	26	0	5	67	1.13
36954--37014	18	3.7	18	68	18	60	73	19	3	3	1.11
37603--37639	17	2.3	17	86	9	51	24	2	0	72	0.97
40749--40886	69	2.0	69	100	0	276	24	20	24	30	1.99
58435--58489	22	2.6	20	78	18	58	41	0	3	54	1.18
58519--58543	13	1.9	13	100	0	50	36	0	0	64	0.94
58846--58892	15	3.2	15	72	6	51	36	0	4	59	1.17
59564--59611	20	2.4	20	82	6	62	64	0	6	29	1.18
60348--60396	15	3.3	15	73	0	53	36	0	4	59	1.17
73851--74367	49	10.6	49	72	10	350	37	19	27	16	1.93
73806--74370	97	5.8	97	84	3	699	36	19	27	16	1.93
73806--74370	196	2.9	194	86	3	746	36	19	27	16	1.93
74829--74896	17	3.9	17	80	5	82	42	1	2	52	1.25
74828--74903	35	2.2	35	88	4	109	43	1	2	52	1.23
74860--74903	6	7.5	6	84	5	63	47	0	2	50	1.13
75616--75742	3	42.0	3	72	7	78	58	2	2	37	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75619--75713	37	2.6	37	96	0	172	57	2	2	37	1.22
76841--77034	30	6.7	29	74	10	139	37	23	2	37	1.69
76858--76939	27	3.0	27	83	7	103	40	17	1	41	1.57
76957--77087	29	4.5	30	72	13	96	39	22	2	35	1.67
76981--77351	58	6.4	57	75	11	272	33	25	3	37	1.73
77093--77179	29	3.0	29	66	8	68	33	24	3	39	1.72
76997--77295	116	2.6	116	79	10	324	33	25	3	38	1.71

Tables:   1

The End!