Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006590.1 Kokia drynarioides strain JFW-HI SEQ_121178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11433
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35


Found at i:6226 original size:17 final size:18

Alignment explanation


    Indices: 6193--6226  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       6183 TCATACATTA

                        *     
       6193 TAAAAGAAGAAATAAAAG
          1 TAAAAGAAGAAAAAAAAG

                             
       6211 TAAAA-AAGAAAAAAAA
          1 TAAAAGAAGAAAAAAAA

       6227 TGAAAGAATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17   10  0.67
  18    5  0.33

ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09


Consensus pattern (18 bp):   
TAAAAGAAGAAAAAAAAG

Found at i:7350 original size:15 final size:14

Alignment explanation


    Indices: 7330--7359  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       7320 AGTAAAACTT

                           
       7330 TATTTTAATATTTTA
          1 TATTTTAA-ATTTTA

                          
       7345 TATTTTAAATTTTA
          1 TATTTTAAATTTTA

             
       7359 T
          1 T

       7360 TAAGCTCGTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    7  0.47
  15    8  0.53

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (14 bp):   
TATTTTAAATTTTA
Done.