Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006598.1 Kokia drynarioides strain JFW-HI SEQ_121187, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2009
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:920 original size:267 final size:266

Alignment explanation


    Indices: 440--934  Score: 900
    Period size: 267  Copynumber: 1.9  Consensus size: 266

        430 ATGATATCCT

                                            *                       **       
        440 TGATTCTTTGAGTTAAATCCATTCACTCAATATAATCCTATTTTATCTCATTGTCATTATCGTGT
          1 TGATTCTTTGAGTTAAATCCATTCACTCAATACAATCCTATTTTATCTCATTGTCACCATCGTGT

                                                                             
        505 CTTCTTAATGAGTAATATGATCACTGTCAACAAATGGCTGTGATAAATTGATCGTTCGAGAATAA
         66 CTTCTTAATGAGTAATATGATCACTGTCAACAAATGGCTGTGATAAATTGATCGTTCGAGAATAA

                                                                             
        570 GCAACCTGTGACGACGTTCCATATTTATCAATCCACAAAATGCCAATGAGAGGATATCATTAACT
        131 GCAACCTGTGACGACGTTCCATATTTATCAATCCACAAAATGCCAATGAGAGGATATCATTAACT

                                                                             
        635 CTTTAATTGAGCTATGAATTTCAATGTTCCTAGTAAAGCCATGCCATACACAAGTCATGTACCCA
        196 CTTTAATTGAGCTATGAATTTCAATGTTCCTAGTAAAGCCATGCCATACACAAGTCATGTACCCA

                  
        700 ACATAC
        261 ACATAC

                                                             *               
        706 TGATTCCTTTGAGTTAAATCCATTCACTCAATACAATCCTATTTTATCTTATTGTCACCATCGTG
          1 TGATT-CTTTGAGTTAAATCCATTCACTCAATACAATCCTATTTTATCTCATTGTCACCATCGTG

                                        *         *                          
        771 TCTTCTTAATGAGTAATATGATCACTGTTAACAAATGGTTGTGATAAATTGATCGTTCGAGAATA
         65 TCTTCTTAATGAGTAATATGATCACTGTCAACAAATGGCTGTGATAAATTGATCGTTCGAGAATA

                                                  *                          
        836 AGCAACCTGTGACGACGTTCCATATTTATCAATCCACACAATGCCAATGAGAGGATATCATTAAC
        130 AGCAACCTGTGACGACGTTCCATATTTATCAATCCACAAAATGCCAATGAGAGGATATCATTAAC

                                  *      *    
        901 TCTTTAATTGAGCTATGAATTTTAATGTTGCTAG
        195 TCTTTAATTGAGCTATGAATTTCAATGTTCCTAG

        935 AACAGTTTTT


Statistics
Matches: 219,  Mismatches: 9, Indels: 1
        0.96            0.04        0.00

Matches are distributed among these distances:
 266    5  0.02
 267  214  0.98

ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35


Consensus pattern (266 bp):   
TGATTCTTTGAGTTAAATCCATTCACTCAATACAATCCTATTTTATCTCATTGTCACCATCGTGT
CTTCTTAATGAGTAATATGATCACTGTCAACAAATGGCTGTGATAAATTGATCGTTCGAGAATAA
GCAACCTGTGACGACGTTCCATATTTATCAATCCACAAAATGCCAATGAGAGGATATCATTAACT
CTTTAATTGAGCTATGAATTTCAATGTTCCTAGTAAAGCCATGCCATACACAAGTCATGTACCCA
ACATAC
Done.