Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006599.1 Kokia drynarioides strain JFW-HI SEQ_121188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59363
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Found at i:5523 original size:109 final size:109
Alignment explanation
Indices: 5329--5571 Score: 351
Period size: 109 Copynumber: 2.2 Consensus size: 109
5319 TTACTATGAT
* * * *
5329 TCGTTGGTTAATCCAACTAGAGCTGGGCTCACTATTTTCTTTCATCAGTTAATCTGACTAGTGCT
1 TCGTTGGTTAATCCAACTAGAGCTGAGCTCACTATTTTATCTCATCAGTTAACCTGACTAGTGCT
* * * * * * *
5394 GGGCACACCTTTGTTGGTTTATCCGACTAGCATTGGGCGTAATA
66 GGGCACACATTCGTCGGTTTATCCAACTAGCACTGGGCATAAAA
* * *
5438 TCTTTGGTTAATCCAATTAGAGCTGAGCTCACTATTTTATCTCATCAGTTAACCTGACTAGTGTT
1 TCGTTGGTTAATCCAACTAGAGCTGAGCTCACTATTTTATCTCATCAGTTAACCTGACTAGTGCT
*
5503 GGGCACACATTCGTCGGTTTATTCAACTAGCACTGGGCATAAAA
66 GGGCACACATTCGTCGGTTTATCCAACTAGCACTGGGCATAAAA
5547 TCGTTGGTTAATCCAACTAGAGCTG
1 TCGTTGGTTAATCCAACTAGAGCTG
5572 GGCTTACTTT
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
109 117 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (109 bp):
TCGTTGGTTAATCCAACTAGAGCTGAGCTCACTATTTTATCTCATCAGTTAACCTGACTAGTGCT
GGGCACACATTCGTCGGTTTATCCAACTAGCACTGGGCATAAAA
Found at i:6680 original size:12 final size:12
Alignment explanation
Indices: 6663--6696 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
6653 TTTCGTATAG
6663 GCACACGGTCTA
1 GCACACGGTCTA
6675 GCACACGGTCTA
1 GCACACGGTCTA
6687 GCACACGGTC
1 GCACACGGTC
6697 CCTCACATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.24, C:0.35, G:0.26, T:0.15
Consensus pattern (12 bp):
GCACACGGTCTA
Found at i:8070 original size:18 final size:18
Alignment explanation
Indices: 8047--8089 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
8037 GAATAGGTTT
8047 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
* *
8065 TTAATTGAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
8083 TTAATTA
1 TTAATTA
8090 CACTTTGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:8934 original size:22 final size:23
Alignment explanation
Indices: 8885--8936 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
8875 ATAAATTTTG
*
8885 ATTTAATATTTTAAAAATTACAT
1 ATTTAATATTGTAAAAATTACAT
* *
8908 TTTTATTATTGTAAAAATTACA-
1 ATTTAATATTGTAAAAATTACAT
8930 ATTTAAT
1 ATTTAAT
8937 TTCGACTTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (23 bp):
ATTTAATATTGTAAAAATTACAT
Found at i:10405 original size:14 final size:14
Alignment explanation
Indices: 10386--10414 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10376 TGTTTTGTGC
10386 AATTTTATGTATGA
1 AATTTTATGTATGA
10400 AATTTTATGTATGA
1 AATTTTATGTATGA
10414 A
1 A
10415 TATTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (14 bp):
AATTTTATGTATGA
Found at i:10949 original size:32 final size:32
Alignment explanation
Indices: 10913--10973 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
10903 AAATATCTCA
*
10913 ATTTGATTTGATTCCAATCAAATTAATTTTCG
1 ATTTGATTTCATTCCAATCAAATTAATTTTCG
* *
10945 ATTTGATTTCATTCTATTCAAATTAATTT
1 ATTTGATTTCATTCCAATCAAATTAATTT
10974 AAAGGCTCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (32 bp):
ATTTGATTTCATTCCAATCAAATTAATTTTCG
Found at i:11406 original size:47 final size:51
Alignment explanation
Indices: 11355--11462 Score: 136
Period size: 51 Copynumber: 2.2 Consensus size: 51
11345 TTTCAGATCT
*
11355 TATTTATTTCA-TTG-TTT-TTTAGATAT-GAT-TTTTTAAATAAATATAAA
1 TATTTATTTAATTTGTTTTGTTTAGATATAG-TGTTTTTAAATAAATATAAA
* *
11402 TATTTATTTAATTTGTTTTGTTTAGATCTAGTGTTTTTACATAAATATAAA
1 TATTTATTTAATTTGTTTTGTTTAGATATAGTGTTTTTAAATAAATATAAA
*
11453 AATTTATTTA
1 TATTTATTTA
11463 TATTATTTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
47 10 0.19
48 3 0.06
49 3 0.06
50 9 0.17
51 27 0.52
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.56
Consensus pattern (51 bp):
TATTTATTTAATTTGTTTTGTTTAGATATAGTGTTTTTAAATAAATATAAA
Found at i:11439 original size:51 final size:48
Alignment explanation
Indices: 11384--11508 Score: 135
Period size: 51 Copynumber: 2.5 Consensus size: 48
11374 TAGATATGAT
* *
11384 TTTTTAAATAAATATAAATATTTATTTA-ATTTGTTTTGTTTAGATCTAGTG
1 TTTTTAAATAAATATAAATATTTATTTATA-TT-ATTTGTTCAGATCTA--G
* *
11435 TTTTTACATAAATATAAAAATTTATTTATATTATTTGTTCAGATCTAG
1 TTTTTAAATAAATATAAATATTTATTTATATTATTTGTTCAGATCTAG
* **
11483 TATTTAATATAAATATTTATATTTAT
1 TTTTTAA-ATAAATATAAATATTTAT
11509 ATGTGTTCGT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
48 6 0.10
49 15 0.24
50 13 0.21
51 28 0.44
52 1 0.02
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (48 bp):
TTTTTAAATAAATATAAATATTTATTTATATTATTTGTTCAGATCTAG
Found at i:12381 original size:221 final size:220
Alignment explanation
Indices: 12014--12486 Score: 645
Period size: 221 Copynumber: 2.2 Consensus size: 220
12004 TGTTAACAAT
* *
12014 CAAACTA-TTTTTTATCTG-AAGTATTTCATTCGTGGTCAATTAGCATAAAACTATTTTTTTCTT
1 CAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACTATTTTTTTCTT
*
12077 GTTAAAAAAAGACATTTAACCACTAGAGTTAAATAAGCTAATAAAAGTAAGAGTACAATTATCAC
66 GTTAAAAAAAGACATTTAACCACAAGAGTTAAATAAGCTAATAAAAGTAAGAGTACAATTATCAC
* * * * * *
12142 TTTAATATAGAGTAATTTAAAAATTATGA-TCAGCGTTTACATCGTAATAGATGTATAGAATTTA
131 CTTAATACAGACTAATTTAAAAATTATGACT-AGCATCTACATCGTAATAGATATATAGAATTTA
**
12206 CTTTAAGGGATGGAGG-AAAAAATGA
195 CTTTAACAGATGGAGGAAAAAAATGA
12231 CAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACTAATTTTTTTCT
1 CAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACT-ATTTTTTTCT
* * * * *
12296 TGTTAAATTAAAGACATTTAACCACAAGAGTTAAATAAGCTAAT-AAAGATAAGATTTCGATTCT
65 TGTTAAA-AAAAGACATTTAACCACAAGAGTTAAATAAGCTAATAAAAG-TAAGAGTACAATTAT
* * * ** * *
12360 CGCCTTAATACAGACTAATTTAAAATTTGTGACTAGCATCTACATTTTAATGGATATATATAATT
128 CACCTTAATACAGACTAATTTAAAAATTATGACTAGCATCTACATCGTAATAGATATATAGAATT
12425 TACTTTAACAGATGGAGGAAAAAAATGA
193 TACTTTAACAGATGGAGGAAAAAAATGA
*
12453 CAAACTATTTATTTATCTGAAAG--TTTTATTCATG
1 CAAACTATTTTTTTATCTGAAAGTATTTTATTCATG
12487 ACTAGAGGTG
Statistics
Matches: 225, Mismatches: 24, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
217 7 0.03
218 11 0.05
219 32 0.14
220 32 0.14
221 111 0.49
222 32 0.14
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.37
Consensus pattern (220 bp):
CAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAATTAGCATAAAACTATTTTTTTCTT
GTTAAAAAAAGACATTTAACCACAAGAGTTAAATAAGCTAATAAAAGTAAGAGTACAATTATCAC
CTTAATACAGACTAATTTAAAAATTATGACTAGCATCTACATCGTAATAGATATATAGAATTTAC
TTTAACAGATGGAGGAAAAAAATGA
Found at i:12790 original size:41 final size:41
Alignment explanation
Indices: 12729--12808 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
12719 ACACTTAAAA
* *
12729 ATATTAAAACAAATATTAAAATAACAAACAAATTAAAAACG
1 ATATTAAAACAAATAGTAAAACAACAAACAAATTAAAAACG
* * *
12770 ATATTAAAACAATTCGTAAAACAACAAACAAATTGAAAA
1 ATATTAAAACAAATAGTAAAACAACAAACAAATTAAAAA
12809 TACAATAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.64, C:0.11, G:0.04, T:0.21
Consensus pattern (41 bp):
ATATTAAAACAAATAGTAAAACAACAAACAAATTAAAAACG
Found at i:13501 original size:24 final size:23
Alignment explanation
Indices: 13462--13507 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
13452 TATTACAAGC
13462 AAAAAAAATTAGTATTAAAAATA
1 AAAAAAAATTAGTATTAAAAATA
* *
13485 AAAATAAAATTATTATTATAAAT
1 AAAA-AAAATTAGTATTAAAAAT
13508 CCGAGCCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
AAAAAAAATTAGTATTAAAAATA
Found at i:14537 original size:212 final size:209
Alignment explanation
Indices: 13785--14864 Score: 837
Period size: 214 Copynumber: 5.0 Consensus size: 209
13775 TTCTCACCTT
* * * * * * * *
13785 GATATAAAGTAATTTAAAACTTGTAACCAGCGTTTACATCTTAATGGATGTATAGAATTTGCTTT
1 GATATAAAGTAATTTAAAATTTATGAGCAGTGTCTACATCTTAATGAATGTATAAAATTTGCTTT
* * *
13850 AACGAATGGAGGAAA-AAATGACAAACTATTTATTTATCTGAAAGTATTTTTATTCATGGTCAAT
66 AAAG-GTGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTA-TTTTATTCATGGTCAAT
* * * *
13914 TAGCATAAAACTA-TTTTTTTCTTGTTAAAAAAAAGACACTTAACCACGAAAGTT-AA--AGCTA
129 TAGCATAAAATTATTTTTTTTCTTGTTAAAAAAAAGATATTTAACCACGAGAGTTAAATGAGCTA
13975 ATAAAGATAAGATTTCGATTCTC
194 ATAAAGATAA-A-----ATT-TC
* * * * * * * *
13998 ATATTAATATACACTAATTTAAAACTTGTGACCAGTATCTACATCTTAATGGATGTATAGAATTT
1 -GA-T-ATA-A-AGTAATTTAAAATTTATGAGCAGTGTCTACATCTTAATGAATGTATAAAATTT
* * * * * *
14063 GTTTTAATTTTGTTTTAATGGATGGAATAAGAAAACGACAAACTA-TTTTTTATCTGAATGTATT
61 GCTTTAA---AG-----GTGGA-GG-A-AA-TAAATGACAAACTATTTTTTTATCTGAAAGTATT
* *
14127 TTATTCATGGTCAATTAGCATAAAACTATTTTTTATCTTGTTAAAAAAAAGATATTTAACCACGA
114 TTATTCATGGTCAATTAGCATAAAATTATTTTTTTTCTTGTTAAAAAAAAGATATTTAACCACGA
*
14192 GAGTT-AATGAGCTAATAAAGATAAGATTTC
179 GAGTTAAATGAGCTAATAAAGATAAAATTTC
* * * * * ** * * * *
14222 AATTCTCACATTAATATAGAGTAATTTAAAAGTAGTATCTACATCTTAATGGATGTATAGAATTT
1 GA-TAT-AAAGTAATTTA-A--AATTTATGAGCAGTGTCTACATCTTAATGAATGTATAAAATTT
* **
14287 GCTTTAACAGATGGAGGAAATTCATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGT
61 GCTTTAA-AGGTGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGT
*
14352 CAATTAGCATAAAATTATTTTTTTTTCTTGTTAAAAATAAATATATTTAACCACGAGAGTTAAAT
125 CAATTAGCATAAAATTA-TTTTTTTTCTTGTTAAAAA-AAAGATATTTAACCACGAGAGTTAAAT
* * *
14417 GAGTTAATAAAGATTAGATTTC
188 GAGCTAATAAAGATAAAATTTC
* * * * *
14439 GATATAGAGTAATTTAAAACTTGTGAGCAGTGTTTACATCTTAATAAATGTATAAAATTTGCTTT
1 GATATAAAGTAATTTAAAATTTATGAGCAGTGTCTACATCTTAATGAATGTATAAAATTTGCTTT
*
14504 AATAGGTGGAGGAAATAAATGACAAATTATTTTTTTATCTGAAAGTATTTTATTCAT-G---ATT
66 AA-AGGTGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAATT
****** * * ** *
14565 AGCATAAAATTA-----TTTAAAAAAAAAAAAAAGACATTTAACCACGATAGTTAAAAAAGGTTA
130 AGCATAAAATTATTTTTTTTCTTGTTAAAAAAAAGATATTTAACCACGAGAGTTAAATGA-GCTA
14625 ATAAAGATGAGATTTAAATTCTC
194 ATAAAGAT---A---AAATT-TC
* ** *
14648 GACTTAATATAAAGTAATTTAAAATTTATGACCAACGTCTACATATTAATGAATGTATAAAATTT
1 G-----ATATAAAGTAATTTAAAATTTATGAGCAGTGTCTACATCTTAATGAATGTATAAAATTT
* * * *
14713 GCTTTAACGGATGAAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATATTATTCATGAT
61 GCTTTAAAGG-TGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGT
* * * * * * *
14778 CAATTAACATAAAA-CAATTTTTTTCTTGTTAAATAAAAA-ATTTTTAACTATGAGAATTAAATG
125 CAATTAGCATAAAATTATTTTTTTTCTTGTTAAA-AAAAAGATATTTAACCACGAGAGTTAAATG
*
14841 AACTAATAAAGATAAAATTTC
189 AGCTAATAAAGATAAAATTTC
14862 GAT
1 GAT
14865 TCTTACCTTA
Statistics
Matches: 710, Mismatches: 105, Indels: 107
0.77 0.11 0.12
Matches are distributed among these distances:
201 24 0.03
202 20 0.03
208 19 0.03
209 5 0.01
211 1 0.00
212 90 0.13
213 12 0.02
214 157 0.22
215 33 0.05
216 29 0.04
217 31 0.04
218 66 0.09
221 18 0.03
222 26 0.04
223 9 0.01
224 45 0.06
225 9 0.01
226 2 0.00
227 1 0.00
228 32 0.05
229 54 0.08
230 12 0.02
231 15 0.02
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (209 bp):
GATATAAAGTAATTTAAAATTTATGAGCAGTGTCTACATCTTAATGAATGTATAAAATTTGCTTT
AAAGGTGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAATTA
GCATAAAATTATTTTTTTTCTTGTTAAAAAAAAGATATTTAACCACGAGAGTTAAATGAGCTAAT
AAAGATAAAATTTC
Found at i:14706 original size:426 final size:427
Alignment explanation
Indices: 13718--14864 Score: 1220
Period size: 426 Copynumber: 2.6 Consensus size: 427
13708 TTTTCTTGTT
*
13718 AAAAAAAAAGACATTTAACCA-GAAGAGTTAAATGAGCTAATAAAGATAAGATTTCGATTCTCAC
1 AAAAAAAAAGACATTTAACCACG-AGAGTTAAATGAGCTAATAAAGATAAGATTTCAATTCTCA-
* * * * *
13782 CTTGATATAAAGTAATTTAAAACTTGTAACCAGCGTTTACATCTTAATGGATGTATAGAATTTGC
64 CTTAATATAAAGTAATTTAAAA-TTATGACCAACGTCTACATCTTAATGGATGTATAGAATTTGC
*
13847 TTTAACGAATGGAGGAAA-AAATGACAAACTATTTATTTATCTGAAAGTATTTTTATTCATGGTC
128 TTTAACG-ATGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTA-TTTTATTCATGGTC
* * *
13911 AATTAGCATAAAACTATTTTTTTCTTGTTAAAAAAAAGACACTTAACCACGAAAGTTAAA-GCTA
191 AATTAGCATAAAA-TATTTTTTTCTTGTTAAAAAAAA-ATATTTAACCACGAGAGTTAAATG--A
* * * *
13975 ATAAAGATAAGATTTCGATTCTCATATTAATATACACTAATTTAAAACTTGTGACCAGTATCTAC
252 ATTAATA-AAGA-TTAGATT-TC-----GATATACACTAATTTAAAACTTGTGACCAGTATCTAC
** * * *
14040 ATCTTAATGGATGTATAGAATTTGTTTTAATTTTGTTTTAATGGATGGAATAAGAAAACGACAAA
309 ATCTTAATAAATGTATAAAATTTGCTTTAA-TTAG---T-ATGGATGGAATAAGAAAACGACAAA
* * ****
14105 CTATTTTTTATCTGAATGTATTTTATTCATGGTCAATTAGCATAAAACTATTTTTTATCTTGT
369 CTATTTTTTATCTGAAAGTATTTTATTCATGG--AATTAGCATAAAAC-ATTATTTA-CAAAA
* *
14168 TAAAAAAAAGATATTTAACCACGAGAGTT-AATGAGCTAATAAAGATAAGATTTCAATTCTCACA
1 AAAAAAAAAGACATTTAACCACGAGAGTTAAATGAGCTAATAAAGATAAGATTTCAATTCTCAC-
* * *
14232 TTAATATAGAGTAATTTAAAAGTA-G---TA--TCTACATCTTAATGGATGTATAGAATTTGCTT
65 TTAATATAAAGTAATTTAAAATTATGACCAACGTCTACATCTTAATGGATGTATAGAATTTGCTT
**
14291 TAACAGATGGAGGAAATTCATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAAT
130 TAAC-GATGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAAT
*
14356 TAGCATAAAATTATTTTTTTTTCTTGTTAAAAATAAATATATTTAACCACGAGAGTTAAATGAGT
194 TAGCATAAAA-TA--TTTTTTTCTTGTTAAAAA-AAA-ATATTTAACCACGAGAGTTAAATGAAT
* * * * *
14421 TAATAAAGATTAGATTTCGATATAGAGTAATTTAAAACTTGTGAGCAGTGTTTACATCTTAATAA
254 TAATAAAGATTAGATTTCGATATACACTAATTTAAAACTTGTGACCAGTATCTACATCTTAATAA
* * * *
14486 ATGTATAAAATTTGCTTTAA-TAG-GTGGA-GG-A-AA-TAAATGACAAATTATTTTTTTATCTG
319 ATGTATAAAATTTGCTTTAATTAGTATGGATGGAATAAGAAAACGACAAACTA-TTTTTTATCTG
14545 AAAGTATTTTATTCAT-G-ATTAGCAT-AAA-ATTATTTA-AAAA
383 AAAGTATTTTATTCATGGAATTAGCATAAAACATTATTTACAAAA
* ** * * *
14585 AAAAAAAAAGACATTTAACCACGATAGTTAAAAAAGGTTAATAAAGATGAGATTTAAATTCTCGA
1 AAAAAAAAAGACATTTAACCACGAGAGTTAAATGA-GCTAATAAAGATAAGATTTCAATTCTC-A
* * *
14650 CTTAATATAAAGTAATTTAAAATTTATGACCAACGTCTACATATTAATGAATGTATAAAATTTGC
64 CTTAATATAAAGTAATTTAAAA-TTATGACCAACGTCTACATCTTAATGGATGTATAGAATTTGC
* * *
14715 TTTAACGGATGAAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATATTATTCATGATCA
128 TTTAAC-GATGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCA
* * * * * * *
14780 ATTAACATAAAACAATTTTTTTCTTGTTAAATAAAAAATTTTTAACTATGAGAATTAAATGAACT
192 ATTAGCATAAAA-TATTTTTTTCTTGTTAAA-AAAAAATATTTAACCACGAGAGTTAAATGAATT
* *
14845 AATAAAGATAAAATTTCGAT
255 AATAAAGATTAGATTTCGAT
14865 TCTTACCTTA
Statistics
Matches: 602, Mismatches: 75, Indels: 67
0.81 0.10 0.09
Matches are distributed among these distances:
417 26 0.04
418 3 0.00
419 51 0.08
420 4 0.01
421 4 0.01
422 8 0.01
423 40 0.07
424 20 0.03
425 14 0.02
426 126 0.21
427 1 0.00
428 2 0.00
429 4 0.01
434 2 0.00
436 57 0.09
441 2 0.00
442 80 0.13
443 33 0.05
444 23 0.04
445 22 0.04
446 1 0.00
448 2 0.00
449 51 0.08
450 25 0.04
451 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (427 bp):
AAAAAAAAAGACATTTAACCACGAGAGTTAAATGAGCTAATAAAGATAAGATTTCAATTCTCACT
TAATATAAAGTAATTTAAAATTATGACCAACGTCTACATCTTAATGGATGTATAGAATTTGCTTT
AACGATGGAGGAAATAAATGACAAACTATTTTTTTATCTGAAAGTATTTTATTCATGGTCAATTA
GCATAAAATATTTTTTTCTTGTTAAAAAAAAATATTTAACCACGAGAGTTAAATGAATTAATAAA
GATTAGATTTCGATATACACTAATTTAAAACTTGTGACCAGTATCTACATCTTAATAAATGTATA
AAATTTGCTTTAATTAGTATGGATGGAATAAGAAAACGACAAACTATTTTTTATCTGAAAGTATT
TTATTCATGGAATTAGCATAAAACATTATTTACAAAA
Found at i:22925 original size:25 final size:27
Alignment explanation
Indices: 22897--22946 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
22887 ATTAAGCATT
*
22897 AAACAATA-ACTTAA-AACACTCATAA
1 AAACAACATACTTAATAACACTCATAA
*
22922 AAACAACATATTTAATAACACTCAT
1 AAACAACATACTTAATAACACTCAT
22947 GCACACAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 5 0.24
27 9 0.43
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (27 bp):
AAACAACATACTTAATAACACTCATAA
Found at i:25660 original size:35 final size:34
Alignment explanation
Indices: 25596--25665 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 34
25586 AGAACAAAAA
* *
25596 TTGATTTTTTTAACTTGAATTTTTTCTTCTTCTTT
1 TTGATTTTTTTAACTTCAATTTTTCCTTCTT-TTT
*
25631 TTGATTTTTTTAATTTCCAA-TTTTCCTTCTTTTT
1 TTGATTTTTTTAACTT-CAATTTTTCCTTCTTTTT
25665 T
1 T
25666 CACTATTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
34 4 0.13
35 25 0.81
36 2 0.06
ACGTcount: A:0.14, C:0.13, G:0.04, T:0.69
Consensus pattern (34 bp):
TTGATTTTTTTAACTTCAATTTTTCCTTCTTTTT
Found at i:30153 original size:215 final size:216
Alignment explanation
Indices: 29709--30154 Score: 529
Period size: 215 Copynumber: 2.1 Consensus size: 216
29699 GAAACCCTAA
* * *
29709 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTCCGGAAAATGGCTCAAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTCCAGAAAATGGATCAAAGGAATGGAT
** ** * *
29774 AGTATTGAATACTTTAAGGAATAAAAGTTTTAAAAGAACTCGTAAAAATTTGATTAGTTTGTAAG
66 AGTATTGAATACTTTAAGGAATAAAAGTTACAAAAGAACTCGTAAAAATTTGACAAGTTCGGAAG
* * * **
29839 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTTAATAAGTTTTTAATTTGAAGACCAAAAG
131 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* **
29904 TTGTTTACAAAATGACAAAGT
196 TTGTTTACAAAATGAAAAACC
* * * * * *
29925 TTTTAGTCCAAATGATGCGA-TTCTCGAGCATGGAAAGTTCAGAAGATTGGAT-TAAGGAATGGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTCCAGAA-AATGGATCAAAGGAATGGA
* * * * ** * ** *
29988 TTGTCTTGAATA-TTCTCAGGATTCGAAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTTCGGA
65 TAGTATTGAATACTT-TAAGGAATAAAAGTTACAAAAGAACTCGTAAAAATTTGACAAGTTCGGA
* *
30052 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACGAAA
129 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
30117 AGTTGTTTACAAATTGAAAAACC
194 AGTTGTTTACAAAATGAAAAACC
30140 ATTTAGACCAAATGA
1 ATTTAGACCAAATGA
30155 ATACTTTAAG
Statistics
Matches: 190, Mismatches: 38, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
214 2 0.01
215 165 0.87
216 23 0.12
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (216 bp):
ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAAGTCCAGAAAATGGATCAAAGGAATGGAT
AGTATTGAATACTTTAAGGAATAAAAGTTACAAAAGAACTCGTAAAAATTTGACAAGTTCGGAAG
TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
TTGTTTACAAAATGAAAAACC
Found at i:30744 original size:215 final size:215
Alignment explanation
Indices: 30152--35513 Score: 5064
Period size: 215 Copynumber: 25.1 Consensus size: 215
30142 TTAGACCAAA
* * * * * *
30152 TGAATACTTTAAGGAACAAAAGTTATAAAAGAACTTGCAAAAGTTTGACTAGTTTGTAAGTTCGT
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * * *
30217 CCTAGAACTAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * *** * * *
30282 TACAAAGTTAAAAACTATTTAGAATGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAGTT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
*
30347 GGTCGAAGGAATGGATCGTCT
195 GCTCGAAGGAATGGATCGTCT
* * * * ***
30368 TTAATGCTCTCAAAAACCGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAAAAGTTCGT
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * * *
30433 CCAATAACAAATAGTGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * *
30498 TACAAAATGATAAACTATTTTGACCAAATGATGCAATTTCCCGAGAATGGAATGTTCGAAAAATT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
* * *
30563 ACTTGAAGGAATGGGTCGTCT
195 GCTCGAAGGAATGGATCGTCT
* * * * * * *
30584 TTAATACTCTCAAGAACCAAAGTTATAAAACAACTTGTAAATTTTTGAAAAGTTTGAAAGTTCAT
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * * * *
30649 CCAAGAACCGAGAGAGAAA-AATTCTCATGTAAATAAATTTTAAATTCAAACACCAAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * ** * *
30713 TACAAAATGACAAACTATTTTGACAAAATGATGCAATTTTTCGAGAATGAAATGTTCGAAAAATT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
* * *
30778 GGTTGAAGGAATGGATTGTCT
195 GCTCGAAGGAATGGATCGTCT
* * * * * * *
30799 TGAATACTATCAGGAACCGAAGTTATAAAAAAGAACTTGTAAATTTTTGAAAAATTCAG-AAGTT
1 TGAATACT-TCAAGAACCAAAGTTAT--AAAAGAACTCGTAAATGTTTGACAAGTT-TGTAAGTT
* **
30863 TGTCCAAGAACTGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
62 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* *
30928 GTTTACAAAATGACAAACTATTTAAACCAAATGATGCGATTTCCCGATCATGGAATGTTC-AGAA
127 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AA
* * *
30992 AATGGCTCAAAGGAATGGATAGTCT
191 AATTGCTCGAAGGAATGGATCGTCT
* * * *
31017 TGAATACTTTAAGAAACCAAAGTTATAAAGGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTCGT
1 TGAATACTTCAAG-AACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * * *
31082 CCTAGAACCAAGAGAGAAACAATTCTCATGTAATTAAGTTTTTAATTCGAAGACCAAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * * * *
31147 TACAAAATGAC--AGTTTTTAGACAAAATGATACGA-TTCCAGAGCATGGAATGTT-TAGAGAAT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAAT
* *
31208 TGGTCGAAGGAATGGATCATCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * *
31230 TGAATACTCTCAGGAACCGAAGTTACAAAAGAACTCTTAAATGTTT-AGCAAGTTTGGAAG-T--
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGA-CAAGTTTGTAAGTTCG
* * * * * *
31291 T-C----ATC---------A-AA-TCTCATGTAAATAAGTTTTTGATTAAAAGACAAAAAGTTAT
64 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * **
31340 TTACAAAATGATAAACTATTTAGACCAAATGATGCGACTTCTTGAGCATGGAATGTTCGAAAAAT
129 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAT
* * * *
31405 TGCACAAAGGAATGCATCGCCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * *
31427 TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGT---TGTTTGACTAGTTCGTAAGTTCGT
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * **
31489 CCAATAACC--GAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAGAAAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * **
31552 TACAAAATGACAAACTATTTAGACC-AA-GATGCAATTTCCTGAGCATGGAATGTTTAAAAAAGT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-T
*
31615 TG-TCGAAGGAATGGATCTTCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * * * * ****
31636 TGAATTCTCTTAGGAACTAAAGTTATAAGAGAACTAGTACATGTTTGACAAGTACAAAAGTTCGT
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
** *
31701 CTGAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCAAAGACC--AAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* *** *
31764 TACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTTTGGAGCATGGAATGTTCGGAAAATT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
31829 GCTCGAAGGAATGGATCGTCT
195 GCTCGAAGGAATGGATCGTCT
* * * *
31850 TGAATACTTAAAGGAACCAAAGTTATAAGAGAACTCATAAAAGTTTGACAAGTTTGTAAGTTCGT
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * *
31915 CCTAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTAATTCGAAGACCAAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * *
31980 TACAGAATGACAAAGT-TCTTAGACCAAATGATGTGA-TCCCCGAGCATGGAATGTTTGAAAAAG
130 TACAAAATGACAAACTAT-TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-
** *
32043 TTG-TCGCTGGAATGGATCATCT
193 TTGCTCGAAGGAATGGATCGTCT
* ** * * * * * *
32065 TGAATACTCTCAGGAGTCGAAGTTACAAAAGTACTCTTAAATGTTTGGCAAGTTCAG-AAGTTCG
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTT-TGTAAGTTCG
* * **
32129 TCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTCA
64 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * * *
32194 TTACAAAATGATAAACTATTTAGACCAAATTATGCGATTT-CC-AGCGTGAAATGTTTGAGAAAT
129 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAT
* *
32257 TGCTCAAAGGAATGGATCGCCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * * **
32279 TGAATACTTTAAGGAATCGAAGTTATAAAAGTACTCGT-AATAGTTTGACTAGTGCGTAAGTTCG
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAAT-GTTTGACAAGTTTGTAAGTTCG
** * * *
32343 TCCAAGAACCCCGAGAGAGACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGT
64 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * *
32408 TTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCAAGCATGAAATGTTTGAAAAAT
129 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAT
* * *
32473 GGCTCAAAGGAATGGATAGTCT
194 TGCTCGAAGGAATGGATCGTCT
* * * *
32495 TGAATACTTCAAGGAACCAAAGTTATAAAAGAAATCGTAAAAGTTTGACTAGTTCGTAAGTTCGT
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
** * * *
32560 CCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGTAGACCAAAAATGGCT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * * * * * * *
32623 TAC-AAAGGACAAAGT-TTTTGATCGAATGATACGA-TTCTCGAGCACT-AAAAGTTCAAAAAAT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGAATGTTCGAAAAAT
*
32684 TGGTCGAAGGAATGGATCGTCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * * * * * * *
32706 AGAATACTCTCAGGAATCGAAGTTACAAAAGAACTCTTAAATGTTTG-CAGGTATGGATGTTCGT
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* *
32770 CCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* ** * *
32835 TACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCAGGAACATGGAATGTTTGAAAAA--
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
32898 --T----GG-AT--A--GTCT
195 GCTCGAAGGAATGGATCGTCT
* * * * *
32908 TGAATACTTTAAGGAGCCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTTGT
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * * * **
32973 CCTAGAACCAAGAGAGCAACAATGCTCATGTAAATAAGTTTTTAATTTGAAGACCAAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * *
33038 TACAAAATGAAAAAGT-TTTAAGACCAAATGATGC-AATTCTCGAGCATTGAGA-GTTCGAAAAA
130 TACAAAATGACAAACTATTT-AGACCAAATGATGCGATTTCCCGAGCATGGA-ATGTTCGAAAAA
* *
33100 TTGGTCGAAGGAATGGATCATCT
193 TTGCTCGAAGGAATGGATCGTCT
* ** * * * *
33123 TGAATAC-TCTAAGGATTAGAAGTTACAAAAGAACTCTTAAATGTTTTG-CAAGTTCGAAAGTTC
1 TGAATACTTC-AAGAACCA-AAGTTATAAAAGAACTCGTAAATG-TTTGACAAGTTTGTAAGTTC
* * * *
33186 GTCCAAGAACCAAAAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGGCAAAAAGTTG
63 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * ** * *
33251 TTTA-ATAAATGACAAACTATTTAAACCGAATGATACGATTTCTTGAGCATGAAATGTTTGAAAA
128 TTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA
* * *
33315 ATGGCTCAAAGGAATGGATAGTCT
192 ATTGCTCGAAGGAATGGATCGTCT
* * * * *
33339 TGAATACTTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTAGT
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
** * *
33404 CTTAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * * * * * * *
33469 TACAAAATGACAAAGTTTTTAAACCGAATGATACGA-TTCTCGAGCATGAAAAGTTAGGAAAATT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
*
33533 GGTCGAAGGAATGGATCGTCT
195 GCTCGAAGGAATGGATCGTCT
* ** * * * * * *
33554 TGAATACTCTCAGGAACTGAAGTTACAAAAGAACTCTTAAATGTTT-AGCAAGTATGGATGTTCA
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGA-CAAGTTTGTAAGTTCG
* * * * *
33618 TCCAAAAACCATGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAATTGT
64 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * **
33683 TTACAAAATGACAAACTATTTAAACCAAATGATGCAATTTCAGGAGCATGGAATGTTCGAAAAAT
129 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAT
* * ** *
33748 GGATAAAAGGAATGGATAGTCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * * *
33770 TGAATACTTTATGGAACAAAAGTTATAAAAGAACTCGTAAAAGCTTAACAAGTTTAG-AAGTTCA
1 TGAATACTTCA-AGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTT-GTAAGTTC-
* *
33834 G-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGCTTTTAATTCAAAGAGCAAAAGTTG
63 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * *
33898 TTTACAAAATCACAAACTATTTAGACCAAATGATGCGA-TTCTCGAGCATGGAAAT-TTCAAAAA
128 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG-AATGTTCGAAAA
* * * *
33961 ATTGGAT-TAAGAAATAGATCGTCT
192 ATT-GCTCGAAGGAATGGATCGTCT
* * ** * * * * *
33985 TGAATGCTCTCACGATTC-TAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTTCAG-AAGTTCG
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTT-TGTAAGTTCG
*
34048 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGT
64 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * * *
34113 TTACAAAATAACAAACTATTTAGACCAAATGATGCAATTTCCAGAGTATCGAATGTTCGAAAAGT
129 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAT
* * ***
34178 GGCTCAAAGGAATGGATAACCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * * *
34200 TGAATACTTTAAGGAACCAATGTTGTAAAAGAACTCGTAAAAGTTTGACTAG-TTGTAAGTTCAT
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * *
34264 CCAAGAACCAAGAGAAAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * * *
34329 TACAAAATGACAAACTTTTTAGATCAAATAAT-CTGATTTTCTGAGCATGGAA--TTAG-AAAAT
130 TACAAAATGACAAACTATTTAGACCAAATGATGC-GATTTCCCGAGCATGGAATGTTCGAAAAAT
* * * *
34390 GGATCAAAGGAATGGATAGTCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * *
34412 TGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAGGTTTGT
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * *
34477 CCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCGAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * * * *
34542 TACAAAATAACAAATTTTTTAGACCAAATGATGTGA-TCCCCAAGCATGGAATGTTCGGAAAAGT
130 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAAT
** *
34606 TG-TCGCTGGAATGAATCGTCT
194 TGCTCGAAGGAATGGATCGTCT
* * * * * ** * * * *
34627 TGAATACTCCCAGGAATCGAAGTTACAAAA-ATACTTTTTAATGTTTGGCAAGTTCGGAAGTTC-
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGA-ACTCGTAAATGTTTGACAAGTTTGTAAGTTCG
* * * *
34690 TACCAAGAACCAAGAAAGAAACAATTCTCACGTAAAT-AGTTTTTAATTCGAAGACCAAAAGCTA
64 T-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * * ** * **
34754 TTTACCAAATGAAAAAGT-TTTAAGACCAAATGATGCGA-TTCTCGAGCATTAAAAGTTTAAAAA
128 TTTACAAAATGACAAACTATTT-AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA
* *
34817 ATAGGTCGAAGGAATGGATCGTCT
192 ATTGCTCGAAGGAATGGATCGTCT
** * ** * * * * ** * * *
34841 AAAATACTCTCAGGATTCGAAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTACGGATGCTCGT
1 TGAATACT-TCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGT
* * *
34906 CCAAAAACCATGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
65 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * * * *
34971 TAGAAAATGATAAACTATTTA-TCGCAAATAAT----TTTCCCGAGCATGGAATGTTTGAAAAAT
130 TACAAAATGACAAACTATTTAGAC-CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAT
* * **
35031 TGCAT-AAAGGAATGGTTCACCT
194 TGC-TCGAAGGAATGGATCGTCT
* * * * * *
35053 TTAATAGTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAGGTTTGACAAGTTTAG-AAGTTCG
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTT-GTAAGTTCG
* * * **
35117 TCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTGAAAGATGAAAAGTT-T
64 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * *
35179 ATTACAAAATGAAAAACTATTTAGACCAAATTATGGGATTTCCTGAGCATGGAATGTTCGAAAAA
129 -TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* * *
35244 TTGCTTGAAAGAGTGGATCGT-T
193 TTGCTCGAAGGAATGGATCGTCT
* ** * * * * *
35266 GTGAATACTTTAATGAACTGAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGGAAGTTCG
1 -TGAATACTTCAA-GAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCG
* * *
35331 TCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACAAAAAGTTGT
64 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
** * * * * * * * *
35396 TTA-ATAAATGATGAACTATTTATACCAGATGATTCGATTTCTCAAGCATTGAATGTTTGGAAAA
129 TTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* * * *
35460 TTGGTTGAAGGAAT-GATAGTGT
193 TTGCTCGAAGGAATGGATCGTCT
* *
35482 TGAATACTTTAAGGAACCAAAGTTATAGAAGA
1 TGAATACTTCAA-GAACCAAAGTTATAAAAGA
35514 TGAAGTGAGC
Statistics
Matches: 4245, Mismatches: 752, Indels: 299
0.80 0.14 0.06
Matches are distributed among these distances:
194 60 0.01
195 4 0.00
196 22 0.01
197 68 0.02
198 2 0.00
201 2 0.00
202 64 0.02
203 97 0.02
204 1 0.00
205 2 0.00
206 3 0.00
207 2 0.00
209 74 0.02
210 80 0.02
211 143 0.03
212 324 0.08
213 238 0.06
214 883 0.21
215 1006 0.24
216 972 0.23
217 67 0.02
218 131 0.03
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (215 bp):
TGAATACTTCAAGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTTGTAAGTTCGTC
CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG
CTCGAAGGAATGGATCGTCT
Found at i:31444 original size:197 final size:194
Alignment explanation
Indices: 31105--31461 Score: 455
Period size: 197 Copynumber: 1.8 Consensus size: 194
31095 GAGAAACAAT
* ** * * * * *
31105 TCTCATGTAATTAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAGTTTTTAGACA
1 TCTCATGTAAATAAGTTTTTAATTAAAAGACAAAAAGTTATTTACAAAATGAAACTATTTAGACA
* * ** * * *
31170 AAATGATACGATTCCAGAGCATGGAATGTTTAGAGAATTGGTCGAAGGAATGGATCATCTTGAAT
66 AAATGATACGATTCCAGAGCATGGAATGTTGAGAAAATTGCACAAAGGAATGCATCACCTTGAAT
*
31235 ACTCTCAGGAACCGAAGTTACAAAAGAACTCTTAAATGTTTAGCAAGTTTGGAAGTTCATCAAA
131 ACTCTAAGGAACCGAAGTTACAAAAGAACTCTTAAATGTTTAGCAAGTTTGGAAGTTCATCAAA
*
31299 TCTCATGTAAATAAGTTTTTGATTAAAAGACAAAAAGTTATTTACAAAATGATAAACTATTTAGA
1 TCTCATGTAAATAAGTTTTTAATTAAAAGACAAAAAGTTATTTACAAAATG--AAACTATTTAGA
* * ** *
31364 CCAAATGATGCGACTTCTTGAGCATGGAATGTTCGA-AAAATTGCACAAAGGAATGCATCGCCTT
64 CAAAATGATACGA-TTCCAGAGCATGGAATGTT-GAGAAAATTGCACAAAGGAATGCATCACCTT
* *
31428 GAATACTTTAAGGAACCGAAGTTATAAAAGAACT
127 GAATACTCTAAGGAACCGAAGTTACAAAAGAACT
31462 TGTTGTTTGA
Statistics
Matches: 135, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
194 45 0.33
196 20 0.15
197 69 0.51
198 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (194 bp):
TCTCATGTAAATAAGTTTTTAATTAAAAGACAAAAAGTTATTTACAAAATGAAACTATTTAGACA
AAATGATACGATTCCAGAGCATGGAATGTTGAGAAAATTGCACAAAGGAATGCATCACCTTGAAT
ACTCTAAGGAACCGAAGTTACAAAAGAACTCTTAAATGTTTAGCAAGTTTGGAAGTTCATCAAA
Found at i:31819 original size:214 final size:214
Alignment explanation
Indices: 31299--35513 Score: 3864
Period size: 214 Copynumber: 19.7 Consensus size: 214
31289 GTTCATCAAA
* * * * * *
31299 TCTCATGTAAATAAGTTTTTGATTAAAAGACAAAAAGTTATTTACAAAATGATAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * *
31364 CCAAATGATGCGACTTCTTGAGCATGGAATGTTCGAAAAATTGCACAAAGGAATGCATCGCCTTG
65 CCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTG
** * * *
31429 AATACTTTAAGGAACCGAAGTTATAAAAGAACTTGT---TGTTTGACTAGTTCGTAAGTTCGTCC
130 AATACTTT-AGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTCC
*
31491 AATAACC--GAGAGAAACAAT
194 AAGAACCAAGAGAGAAACAAT
* **
31510 TCTCATGTAAATAAGTTTTTAATTCAAAGAGAAAAAGTTGTTTACAAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGA-CCAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * *
31575 CC-AA-GATGCAATTTC-CTGAGCATGGAATGTTTAAAAAAGTTG-TCGAAGGAATGGATCTTCT
65 CCAAATGATGCGATTTCTC-GAGCATGGAATGTTTGAAAAA-TTGCTCGAAGGAATGGATCGTCT
* * * * * **
31636 TGAATTCTCTTAGGAACTAAAGTTATAAGAGAACTAGTACATGTTTGACAAGTACAAAAGTTCGT
128 TGAATACT-TTAGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGT
**
31701 CTGAGAACCAAGAGAGAAACAAT
192 CCAAGAACCAAGAGAGAAACAAT
* *
31724 TTTCACGTAAATAAGTTTTTAATTCAAAGACC-AAGTTGTTTACAAAATGAAAAACTATTTAGAC
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * *
31788 CAAATGATGCGATTTTTGGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGA
66 CAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
* * * * * * * *
31853 ATACTTAAAGGAACCAAAGTTATAAGAGAACTCATAAAAGTTTGACAAGTTTGTAAGTTCGTCCT
131 ATACTT-TAGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTCCA
31918 AGAACCAAGAGAGAAACAAT
195 AGAACCAAGAGAGAAACAAT
* * * *
31938 TCTCACGTAATTAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAGAATGACAAAGT-TCTTAG
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTAT-TTAG
* * * ** *
32002 ACCAAATGATGTGA-TCCCCGAGCATGGAATGTTTGAAAAAGTTG-TCGCTGGAATGGATCATCT
64 ACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAA-TTGCTCGAAGGAATGGATCGTCT
* * * * * * * *
32065 TGAATACTCTCAGG-AGTCGAAGTTACAAAAGTACTCTTAAATGTTTGGCAAGTTCAGAAGTTCG
128 TGAATACT-TTAGGAACT-AAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCG
32129 TCCAAGAACCAAGAGAGAAACAAT
191 TCCAAGAACCAAGAGAGAAACAAT
* * ** *
32153 TCTCATGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTCATTACAAAATGATAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * *
32218 CCAAATTATGCGATTTC-C-AGCGTGAAATGTTTGAGAAATTGCTCAAAGGAATGGATCGCCTTG
65 CCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * * *
32281 AATACTTTAAGGAA-TCGAAGTTATAAAAGTACTCGT-AATAGTTTGACTAGTGCGTAAGTTCGT
130 AATACTTT-AGGAACT-AAAGTTATAAAAGAACTCGTAAAT-GTTTGACAAGTTCGGAAGTTCGT
** *
32344 CCAAGAACCCCGAGAGAGACAAT
192 CCAAGAACCAAGAGAGAAACAAT
* *
32367 TCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * *
32432 CCAAATGATGCAATTTCCCAAGCATGAAATGTTTGAAAAATGGCTCAAAGGAATGGATAGTCTTG
65 CCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * * * *
32497 AATACTTCAAGGAACCAAAGTTATAAAAGAAATCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCC
130 AATACTT-TAGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTCC
32562 AAGAACC-A-AGAGAAACAAT
194 AAGAACCAAGAGAGAAACAAT
** * * * * * *
32581 TCTCACGTAAATAAGTTTTTAATTCGTAGACCAAAAATGGCTTAC-AAAGGACAAAGT-TTTTGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * ** * *
32644 TCGAATGATACGA-TTCTCGAGCACT-AAAAGTTCAAAAAATTGGTCGAAGGAATGGATCGTCTA
65 CCAAATGATGCGATTTCTCGAGCA-TGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTT
* * * * * *
32707 GAATACTCTCAGGAA-TCGAAGTTACAAAAGAACTCTTAAATGTTTG-CAGGTAT-GGATGTTCG
129 GAATACT-TTAGGAACT-AAAGTTATAAAAGAACTCGTAAATGTTTGACAAGT-TCGGAAGTTCG
*
32769 TCCAAAAACCAAGAGAGAAACAAT
191 TCCAAGAACCAAGAGAGAAACAAT
*
32793 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGA
* ** *
32858 CCAAATGATGCAATTTCAGGAACATGGAATGTTTGAAAAA----T----GG-AT--A--GTCTTG
65 CCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * * * * *
32910 AATACTTTAAGGAGCCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTTGTCC
130 AATACTTT-AGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTCC
* *
32975 TAGAACCAAGAGAGCAACAAT
194 AAGAACCAAGAGAGAAACAAT
* * ** * *
32996 GCTCATGTAAATAAGTTTTTAATTTGAAGACCAAAAGTTGTTTACAAAATGAAAAAGT-TTTAAG
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTT-AG
* * * * *
33060 ACCAAATGATGC-AATTCTCGAGCATTGAGA-GTTCGAAAAATTGGTCGAAGGAATGGATCATCT
64 ACCAAATGATGCGATTTCTCGAGCATGGA-ATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCT
* * * * *
33123 TGAATACTCTAAGG-ATTAGAAGTTACAAAAGAACTCTTAAATGTTTTG-CAAGTTCGAAAGTTC
128 TGAATACT-TTAGGAACTA-AAGTTATAAAAGAACTCGTAAATG-TTTGACAAGTTCGGAAGTTC
*
33186 GTCCAAGAACCAAAAGAGAAACAAT
190 GTCCAAGAACCAAGAGAGAAACAAT
* * * *
33211 TCTCATGTAAATAAGTTTTTAATTCAAAGGCAAAAAGTTGTTTA-ATAAATGACAAACTATTTAA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAGTTGTTTACA-AAATGACAAACTATTTAG
* * * * * * *
33275 ACCGAATGATACGATTTCTTGAGCATGAAATGTTTGAAAAATGGCTCAAAGGAATGGATAGTCTT
64 ACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTT
* * * * * * *
33340 GAATACTTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAAGTTAGTC
129 GAATACTTT-AGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTC
**
33405 TTAGAACCAAGAGAGAAACAAT
193 CAAGAACCAAGAGAGAAACAAT
* * * *
33427 TCTCATGTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAAGTTTTTAAA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGA-CCAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * *
33492 CCGAATGATACGA-TTCTCGAGCATGAAAAGTTAGGAAAATTGGTCGAAGGAATGGATCGTCTTG
65 CCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * * * *
33556 AATACTCTCAGGAACTGAAGTTACAAAAGAACTCTTAAATGTTT-AGCAAGTAT-GGATGTTCAT
130 AATACT-TTAGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGA-CAAGT-TCGGAAGTTCGT
* *
33619 CCAAAAACCATGAGAGAAACAAT
192 CCAAGAACCAAGAGAGAAACAAT
* * * *
33642 TCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAATTGTTTACAAAATGACAAACTATTTAAA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGA
* ** * * * ** *
33707 CCAAATGATGCAATTTCAGGAGCATGGAATGTTCGAAAAATGGATAAAAGGAATGGATAGTCTTG
65 CCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * * **
33772 AATACTTTATGGAACAAAAGTTATAAAAGAACTCGTAAAAGCTTAACAAGTTTAGAAGTTCAG-C
130 AATACTTTA-GGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTC-GTC
33836 CAAGAACCAAGAGAGAAACAAT
193 CAAGAACCAAGAGAGAAACAAT
* * *
33858 TCTCACGTAAATAAGCTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATCACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGA-CCAAAGTTGTTTACAAAATGACAAACTATTTAGA
** * * * *
33923 CCAAATGATGCGA-TTCTCGAGCATGGAAAT-TTCAAAAAATTGGAT-TAAGAAATAGATCGTCT
65 CCAAATGATGCGATTTCTCGAGCATGG-AATGTTTGAAAAATT-GCTCGAAGGAATGGATCGTCT
* * * * * * * *
33985 TGAATGCTCTCACGATTCT--AGTTACAAAAGAACTCTTAAATGTTTGGCAAGTTCAGAAGTTCG
128 TGAATACT-TTAGGA-ACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCG
34048 TCCAAGAACCAAGAGAGAAACAAT
191 TCCAAGAACCAAGAGAGAAACAAT
* *
34072 TCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAAAATAACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * * ***
34137 CCAAATGATGCAATTTC-CAGAGTATCGAATGTTCGAAAAGTGGCTCAAAGGAATGGATAACCTT
65 CCAAATGATGCGATTTCTC-GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTT
* * * * * * *
34201 GAATACTTTAAGGAACCAATGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTT-GTAAGTTCATC
129 GAATACTTT-AGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTC
*
34265 CAAGAACCAAGAGAAAAACAAT
193 CAAGAACCAAGAGAGAAACAAT
* * *
34287 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTTTTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * *
34352 TCAAATAAT-CTGATTT-TCTGAGCATGGAA--TTAG-AAAATGGATCAAAGGAATGGATAGTCT
65 CCAAATGATGC-GATTTCTC-GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCT
* * * * * * *
34412 TGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAGGTTTGT
128 TGAATACTTT-AGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGT
*
34477 CCTAGAACCAAGAGAGAAACAAT
192 CCAAGAACCAAGAGAGAAACAAT
* * * *
34500 TCTCACGTAAATAAGTTTTTAATTCGAAGACCGAAAGTTGTTTACAAAATAACAAATTTTTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * ** *
34565 CCAAATGATGTGA-TCCCCAAGCATGGAATGTTCGGAAAAGTTG-TCGCTGGAATGAATCGTCTT
65 CCAAATGATGCGATTTCTCGAGCATGGAATGTT-TGAAAAATTGCTCGAAGGAATGGATCGTCTT
** * * ** * *
34628 GAATACTCCCAGGAA-TCGAAGTTACAAAA-ATACTTTTTAATGTTTGGCAAGTTCGGAAGTTC-
129 GAATACT-TTAGGAACT-AAAGTTATAAAAGA-ACTCGTAAATGTTTGACAAGTTCGGAAGTTCG
*
34690 TACCAAGAACCAAGAAAGAAACAAT
191 T-CCAAGAACCAAGAGAGAAACAAT
* * * * * *
34715 TCTCACGTAAAT-AGTTTTTAATTCGAAGACCAAAAGCTATTTACCAAATGAAAAAGT-TTTAAG
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTT-AG
** * * * * *
34778 ACCAAATGATGCGA-TTCTCGAGCATTAAAAGTTTAAAAAATAGGTCGAAGGAATGGATCGTCTA
64 ACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTT
* * * * * * * * * *
34842 AAATACTCTCAGG-ATTCGAAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTACGGATGCTCGT
129 GAATACT-TTAGGAACT-AAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGT
* * *
34906 CCAAAAACCATGAAAGAAACAAT
192 CCAAGAACCAAGAGAGAAACAAT
* * *
34929 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGATAAACTATTTA-T
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * **
34993 CGCAAATAAT----TTTCCCGAGCATGGAATGTTTGAAAAATTGCAT-AAAGGAATGGTTCACCT
65 C-CAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGC-TCGAAGGAATGGATCGTCT
* * ** * * **
35053 TTAATAGTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAGGTTTGACAAGTTTAGAAGTTCGT
128 TGAATACTTT-AGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGT
35118 CCAAGAACCAAGAGAGAAACAAT
192 CCAAGAACCAAGAGAGAAACAAT
* * * ** *
35141 TGTCATGTAAAT-A-TTTTTAATTGAAAGATGAAAAGTT-TATTACAAAATGAAAAACTATTTAG
1 TCTCACGTAAATAAGTTTTTAATTCAAAGA-CCAAAGTTGT-TTACAAAATGACAAACTATTTAG
* * * * * *
35203 ACCAAATTATGGGATTTC-CTGAGCATGGAATGTTCGAAAAATTGCTTGAAAGAGTGGATCGT-T
64 ACCAAATGATGCGATTTCTC-GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCT
* * * * *
35266 GTGAATACTTTAATGAACTGAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGGAAGTTCG
128 -TGAATACTTT-AGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCG
*
35331 TCCAAAAACCAAGAGAGAAACAAT
191 TCCAAGAACCAAGAGAGAAACAAT
* * ** *
35355 TCTCACGTAAATAAGTTTTTAATTTAAAGACAAAAAGTTGTTTA-ATAAATGATGAACTATTTAT
1 TCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAGTTGTTTACA-AAATGACAAACTATTTAG
* * * * * * * * *
35419 ACCAGATGATTCGATTTCTCAAGCATTGAATGTTTGGAAAATTGGTTGAAGGAAT-GATAGTGTT
64 ACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTT
* *
35483 GAATACTTTAAGGAACCAAAGTTATAGAAGA
129 GAATACTTT-AGGAACTAAAGTTATAAAAGA
35514 TGAAGTGAGC
Statistics
Matches: 3302, Mismatches: 563, Indels: 274
0.80 0.14 0.07
Matches are distributed among these distances:
201 1 0.00
202 64 0.02
203 96 0.03
204 1 0.00
206 3 0.00
207 2 0.00
209 73 0.02
210 75 0.02
211 143 0.04
212 322 0.10
213 151 0.05
214 868 0.26
215 865 0.26
216 628 0.19
217 10 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAATGACAAACTATTTAGAC
CAAATGATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
ATACTTTAGGAACTAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
GAACCAAGAGAGAAACAAT
Found at i:33445 original size:431 final size:430
Alignment explanation
Indices: 31299--35513 Score: 4356
Period size: 431 Copynumber: 9.9 Consensus size: 430
31289 GTTCATCAAA
* * * * *
31299 TCTCATGTAAATAAGTTTTTGATTAAAAGACAAAAAGTTATTTACAAAATGATAAACTATTTAGA
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
* * * ** * * *
31364 CCAAATGATGCGACTTCTTGAGCATGGAATGTTCGAAAAATTGCACAAAGGAATGCATCGCCTTG
66 CCAAATGATGCGA-TTCTCGAGCATTGAAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTG
* * * *
31429 AATACTTTAAGGAAC-CGAAGTTATAAAAGAACT-TGT---TGTTTGACTAGTTCGTAAGTTCGT
130 AATACTCTAAGG-ACTCGAAGTTACAAAAGAACTCT-TAAATGTTTGACAAGTTCGGAAGTTCGT
* * **
31489 CCAATAACC--GAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAGAAAAAGTTGTT
193 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* *
31552 TACAAAATGACAAACTATTTAGACC-AA-GATGCAATTTCCTGAGCATGGAATGTTTAAAAAAGT
258 TACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAA-T
* * ** * * * * * *
31615 TGTCGAAGGAATGGATCTTCTTGAATTCTCTT-AGGAACTAAAGTTATAAGAGAACTAGTACATG
322 GGTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG
**** **
31679 TTTGACAAGTACAAAAGTTCGTCTGAGAACCAAGAGAGAAACAAT
386 TTTGACAAGTTTGTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* *
31724 TTTCACGTAAATAAGTTTTTAATTCAAAGACC--AAGTTGTTTACAAAATGAAAAACTATTTAGA
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
* * * * * *
31787 CCAAATGATGCGATTTTTGGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTG
66 CCAAATGATGCGA-TTCTCGAGCATTGAAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTG
* * * * * * *
31852 AATACT-TAAAGGAAC-CAAAGTTATAAGAGAACTCATAAAAGTTTGACAAGTTTGTAAGTTCGT
130 AATACTCT-AAGG-ACTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGGAAGTTCGT
* * *
31915 CCTAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTAATTCGAAGACCAAAAGTTGTT
193 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* * ** *
31980 TACAGAATGACAAAGT-TCTTAGACCAAATGATGTGA-TCCCCGAGCATGGAATGTTTGAAAAAG
258 TACAAAATGACAAACTAT-TTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAA-
* *** * * ** * * * * *
32043 TTGTCGCTGGAATGGATCA-TCTTGAATACTCTCAGGAGTCGAAGTTACAAAAGTACTCTTAAAT
321 TGGTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA
* *
32107 GTTTGGCAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAAT
385 GTTTGACAAGTT-TGTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* ** *
32153 TCTCATGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTCATTACAAAATGATAAACTATTTAGA
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
* * * * * * * *
32218 CCAAATTATGCGATT-TCCAGC-GTGAAATGTTTGAGAAATTGCTCAAAGGAATGGATCGCCTTG
66 CCAAATGATGCGATTCTCGAGCATTGAAA-GTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTG
* * * * * * * *
32281 AATACTTTAAGGAATCGAAGTTATAAAAGTACTCGT-AATAGTTTGACTAGTGCGTAAGTTCGTC
130 AATACTCTAAGGACTCGAAGTTACAAAAGAACTCTTAAAT-GTTTGACAAGTTCGGAAGTTCGTC
** * * *
32345 CAAGAACCCCGAGAGAGACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGTTT
194 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* *
32410 ACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCAAGCATGAAATGTTTGAAAAATGG
259 ACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAATGG
* *
32475 CTCAAAGGAATGGATAGTCTTGAATACTTCAAGGAACCAAAGTTATAAAAGAAATCGTAAAAGTT
324 -TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* *
32540 TGACTAGTTCGTAAGTTCGTCCAAGAACC-A-AGAGAAACAAT
388 TGACAAGTTTGTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* ** * * * * * * *
32581 TCTCACGTAAATAAGTTTTTAATTCGTAGACCAAAAATGGCTTAC-AAAGGACAAAGT-TTTTGA
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
* * * * * * *
32644 TCGAATGATACGATTCTCGAGCACTAAAAGTTCAAAAAATTGGTCGAAGGAATGGATCGTCTAGA
66 CCAAATGATGCGATTCTCGAGCATTGAAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGA
* * * *
32709 ATACTCTCAGGAATCGAAGTTACAAAAGAACTCTTAAATGTTTG-CAGGTAT-GGATGTTCGTCC
131 ATACTCTAAGGACTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGT-TCGGAAGTTCGTCC
* *
32772 AAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTA
195 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
** *
32837 CAAAATGACAAACTATTTAGACCAAATGATGCAATTTCAGGAACATGGAATG-TT------T-G-
260 CAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAATGGT
*
32893 -AAA--AATGGATAGTCTTGAATACTTTAAGGAGCCAAAGTTATAAAAGAACTCGTAAAAGTTTG
325 CAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * *
32955 ACTAGTTTGTAAGTTTGTCCTAGAACCAAGAGAGCAACAAT
390 ACAAGTTTGTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* ** *
32996 GCTCATGTAAATAAGTTTTTAATTTGAAGACCAAAAGTTGTTTACAAAATGAAAAAGT-TTTAAG
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTT-AG
* * *
33060 ACCAAATGATGCAATTCTCGAGCATTGAGAGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTG
65 ACCAAATGATGCGATTCTCGAGCATTGAAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTG
* * *
33125 AATACTCTAAGGATTAGAAGTTACAAAAGAACTCTTAAATGTTTTG-CAAGTTCGAAAGTTCGTC
130 AATACTCTAAGGACTCGAAGTTACAAAAGAACTCTTAAATG-TTTGACAAGTTCGGAAGTTCGTC
* * * *
33189 CAAGAACCAAAAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGGCAAAAAGTTGTTT
194 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * ** *
33254 A-ATAAATGACAAACTATTTAAACCGAATGATACGATTTCTTGAGCATGAAATGTTTGAAAAATG
259 ACA-AAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAATG
*
33318 GCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGT
323 G-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGT
* * **
33383 TTGACTAGTTTGTAAGTTAGTCTTAGAACCAAGAGAGAAACAAT
387 TTGACAAGTTTGTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * * * *
33427 TCTCATGTAAATAAGTTTTTAATTCAAAGACCCAAAGTTGTTTACAAAATGACAAAGTTTTTAAA
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
* * * *
33492 CCGAATGATACGATTCTCGAGCA-TGAAAAGTTAGGAAAATTGGTCGAAGGAATGGATCGTCTTG
66 CCAAATGATGCGATTCTCGAGCATTG-AAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTG
* * *
33556 AATACTCTCAGGAACT-GAAGTTACAAAAGAACTCTTAAATGTTT-AGCAAGTAT-GGATGTTCA
130 AATACTCTAAGG-ACTCGAAGTTACAAAAGAACTCTTAAATGTTTGA-CAAGT-TCGGAAGTTCG
* * * * *
33618 TCCAAAAACCATGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAAATTGT
192 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* ** *
33683 TTACAAAATGACAAACTATTTAAACCAAATGATGCAATTTCAGGAGCATGGAATGTTCGAAAAAT
257 TTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAAT
* * *
33748 GGATAAAAGGAATGGATAGTCTTGAATACTTTATGGAACAAAAGTTATAAAAGAACTCGTAAAAG
322 GG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG
* *
33813 CTTAACAAGTTTAG-AAGTTCAG-CCAAGAACCAAGAGAGAAACAAT
386 TTTGACAAGTTT-GTAAGTTC-GTCCAAGAACCAAGAGAGAAACAAT
* * * * *
33858 TCTCACGTAAATAAGCTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATCACAAACTATTTAGA
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
* * * * * *
33923 CCAAATGATGCGATTCTCGAGCATGGAAATTTCAAAAAATTGGAT-TAAGAAATAGATCGTCTTG
66 CCAAATGATGCGATTCTCGAGCATTGAAAGTTCGAAAAATTGG-TCGAAGGAATGGATCGTCTTG
* * * * * * *
33987 AATGCTCTCACGATTC-TAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTTCAGAAGTTCGTCC
130 AATACTCTAAGGACTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGGAAGTTCGTCC
*
34051 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTA
195 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * *
34116 CAAAATAACAAACTATTTAGACCAAATGATGCAATTTCCAGAGTATCGAATGTTCGAAAAGTGGC
260 CAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAATGG-
** * *
34181 TCAAAGGAATGGATAACCTTGAATACTTTAAGGAACCAATGTTGTAAAAGAACTCGTAAAAGTTT
324 TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
* * *
34246 GACTAG-TTGTAAGTTCATCCAAGAACCAAGAGAAAAACAAT
389 GACAAGTTTGTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * *
34287 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTTTTTAGA
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
* * * * * * *
34352 TCAAATAAT-CTGATTTTCTGAGCA-TGGAA-TTAG-AAAA-TGGATCAAAGGAATGGATAGTCT
66 CCAAATGATGC-GATTCTC-GAGCATTGAAAGTTCGAAAAATTGG-TCGAAGGAATGGATCGTCT
* * * * * * * * * *
34412 TGAATACTTTAAGGAAC-CAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGTAGGTTTG
128 TGAATACTCTAAGG-ACTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGGAAGTTCG
* * *
34476 TCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCGAAAGTTGT
192 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * ** * * * *
34541 TTACAAAATAACAAATTTTTTAGACCAAATGATGTGA-TCCCCAAGCATGGAATGTTCGGAAAAG
257 TTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTT-TGAAAAA
* *** * * *** * * * ** * *
34605 TTGTCGCTGGAATGAATCGTCTTGAATACTCCCAGGAATCGAAGTTACAAAA-ATACTTTTTAAT
321 TGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA-ACTCGTAAAA
* * * *
34669 GTTTGGCAAGTTCGGAAGTTC-TACCAAGAACCAAGAAAGAAACAAT
385 GTTTGACAAGTTTGTAAGTTCGT-CCAAGAACCAAGAGAGAAACAAT
* * * * * *
34715 TCTCACGTAAAT-AGTTTTTAATTCGAAGACCAAAAGCTATTTACCAAATGAAAAAGT-TTTAAG
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTT-AG
* ** * **
34778 ACCAAATGATGCGATTCTCGAGCATTAAAAGTTTAAAAAATAGGTCGAAGGAATGGATCGTCTAA
65 ACCAAATGATGCGATTCTCGAGCATTGAAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTG
* * * * * *
34843 AATACTCTCAGGATTCGAAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTACGGATGCTCGTCC
130 AATACTCTAAGGACTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGGAAGTTCGTCC
* * *
34908 AAAAACCATGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
195 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * *
34973 GAAAATGATAAACTATTTA-TCGCAAAT-A---ATTTTCCCGAGCATGGAATGTTTGAAAAATTG
260 CAAAATGACAAACTATTTAGAC-CAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAATGG
* * * * * * *
35033 -CATAAAGGAATGGTTCA-CCTTTAATAGTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAGG
324 TC--AAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG
35096 TTTGACAAGTTTAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAAT
386 TTTGACAAGTTT-GTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * **
35141 TGTCATGTAAAT-A-TTTTTAATTGAAAGATGAAAAGTT-TATTACAAAATGAAAAACTATTTAG
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT-TTACAAAATGAAAAACTATTTAG
* * * * * * * *
35203 ACCAAATTATGGGATT-TCCTGAGCATGGAATGTTCGAAAAATTGCTTGAAAGAGTGGATCGT-T
65 ACCAAATGATGCGATTCT-C-GAGCATTGAAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCT
* * * * * *
35266 GTGAATACTTTAATGAACT-GAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGGAAGTTC
128 -TGAATACTCTAA-GGACTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGGAAGTTC
* * *
35330 GTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACAAAAAGTTG
191 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
** * * * * * * *
35395 TTTA-ATAAATGATGAACTATTTATACCAGATGATTCGATTTCTCAAGCATTGAATGTTTGGAAA
256 TTTACA-AAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTT-GAAA
* ** * *
35459 ATTGGTTGAAGGAAT-GATAGTGTTGAATACTTTAAGGAACCAAAGTTATAGAAGA
319 AATGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
35514 TGAAGTGAGC
Statistics
Matches: 3173, Mismatches: 514, Indels: 202
0.82 0.13 0.05
Matches are distributed among these distances:
413 80 0.03
414 1 0.00
415 51 0.02
416 13 0.00
417 96 0.03
418 120 0.04
419 3 0.00
422 1 0.00
423 116 0.04
424 3 0.00
425 91 0.03
426 449 0.14
427 235 0.07
428 321 0.10
429 600 0.19
430 360 0.11
431 622 0.20
432 11 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (430 bp):
TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
CCAAATGATGCGATTCTCGAGCATTGAAAGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGA
ATACTCTAAGGACTCGAAGTTACAAAAGAACTCTTAAATGTTTGACAAGTTCGGAAGTTCGTCCA
AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
AAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTTGAAAAATGGTC
AAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGA
CAAGTTTGTAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
Found at i:36715 original size:50 final size:52
Alignment explanation
Indices: 36638--36775 Score: 142
Period size: 50 Copynumber: 2.7 Consensus size: 52
36628 TGCATGACTT
* *
36638 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATTCATGATAG
1 GATTTAATGATGCAAACTTTAACTAACATGGAAGTTACATAATGCATGATAG
* * * *
36690 GATTT-ATGATGCATA-TTTAACTAACATGTAAGTTACTTAATGCATG-TCAT
1 GATTTAATGATGCAAACTTTAACTAACATGGAAGTTACATAATGCATGAT-AG
* * *
36740 TATTT-ATTATGCAAAC-TTAACTAATCATGAAAGTTA
1 GATTTAATGATGCAAACTTTAACTAA-CATGGAAGTTA
36776 ATGGATGTCA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
49 1 0.01
50 48 0.66
51 19 0.26
52 5 0.07
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (52 bp):
GATTTAATGATGCAAACTTTAACTAACATGGAAGTTACATAATGCATGATAG
Found at i:36986 original size:11 final size:11
Alignment explanation
Indices: 36972--37002 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
36962 AACACTTATT
36972 AAACTAAAATA
1 AAACTAAAATA
36983 AAACTAAAATA
1 AAACTAAAATA
*
36994 AAATTAAAA
1 AAACTAAAA
37003 AGTCCTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (11 bp):
AAACTAAAATA
Found at i:38428 original size:18 final size:18
Alignment explanation
Indices: 38392--38436 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
38382 CACTCTTTCT
38392 TTTCTTTCTTCATTCTCGA
1 TTTCTTT-TTCATTCTCGA
38411 TTTCTTTTTCAATT-TCGA
1 TTTCTTTTTC-ATTCTCGA
*
38429 TATCTTTT
1 TTTCTTTT
38437 CTCACACTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.13, C:0.20, G:0.04, T:0.62
Consensus pattern (18 bp):
TTTCTTTTTCATTCTCGA
Found at i:39494 original size:24 final size:24
Alignment explanation
Indices: 39448--39496 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
39438 TTTTTTCTTC
39448 TTTTTTTTTCTTTTTTTAATTCAAA
1 TTTTTTTTTCTTTTTTT-ATTCAAA
39473 TTTTTTTCTTCTTTTTTT-TTCAAA
1 TTTTTTT-TTCTTTTTTTATTCAAA
39497 CTTCGAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.26
25 7 0.30
26 10 0.43
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTTTTTTCTTTTTTTATTCAAA
Found at i:39507 original size:28 final size:28
Alignment explanation
Indices: 39476--39550 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 28
39466 ATTCAAATTT
39476 TTTTCTTCTTTTTTTTTCAA-ACTTCGAA
1 TTTTCTTCTTTTTTTTTCAATACTTC-AA
*
39504 TTTTCTT-TGATTTTTTTTCAATATTTCAA
1 TTTTCTTCT--TTTTTTTTCAATACTTCAA
39533 TTTT-TTCCTTTTTCTTTT
1 TTTTCTT-CTTTTT-TTTT
39551 ACTTTTTCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
27 1 0.03
28 13 0.32
29 21 0.52
30 5 0.12
ACGTcount: A:0.15, C:0.15, G:0.03, T:0.68
Consensus pattern (28 bp):
TTTTCTTCTTTTTTTTTCAATACTTCAA
Found at i:40840 original size:50 final size:50
Alignment explanation
Indices: 40736--40891 Score: 145
Period size: 50 Copynumber: 3.1 Consensus size: 50
40726 AACTAATGAA
* * ** * **
40736 TTACTAAATGCATGACTTGATTTAATGATGAAAACTTTAACTAACATGGGAG
1 TTACTTAATGCATGTCAGGATTT-ATGATGCAAA-TTTAACTAACATGAAAG
* *
40788 TTACATT-ATGCATGAT-AGGATTTATGATGCATATTTAACTAACATGTAAG
1 TTAC-TTAATGCATG-TCAGGATTTATGATGCAAATTTAACTAACATGAAAG
** *
40838 TTACTTAATGCATGTCATTATTTATGATGCAAACTTAACTAATCATGAAAG
1 TTACTTAATGCATGTCAGGATTTATGATGCAAATTTAACTAA-CATGAAAG
40889 TTA
1 TTA
40892 ATGGATGTAA
Statistics
Matches: 86, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
49 3 0.03
50 48 0.56
51 18 0.21
52 16 0.19
53 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (50 bp):
TTACTTAATGCATGTCAGGATTTATGATGCAAATTTAACTAACATGAAAG
Found at i:40943 original size:33 final size:33
Alignment explanation
Indices: 40895--40959 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
40885 AAAGTTAATG
* *
40895 GATGTAATTACATAATGCATGTCATATTTAAAA
1 GATGTAATTACATAATGCATGACATAATTAAAA
40928 GATGTAGATTA-ATAATGCATGACATAATTAAA
1 GATGTA-ATTACATAATGCATGACATAATTAAA
40960 TCACAATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.34
Consensus pattern (33 bp):
GATGTAATTACATAATGCATGACATAATTAAAA
Found at i:41086 original size:17 final size:17
Alignment explanation
Indices: 41055--41087 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
41045 CAAACACTTG
41055 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
41072 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
41088 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:41745 original size:214 final size:214
Alignment explanation
Indices: 41223--43548 Score: 2357
Period size: 214 Copynumber: 10.8 Consensus size: 214
41213 CTCACATTAG
* * *
41223 AAGAACTCATAAAAGTTTGACAAGTT-TAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
1 AAGAACT-GTAAAAGTTTGACTAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * ** *
41287 ATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACAAAATGAAAAAGGATTTAGAACAA
64 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
41350 ATGTTGTGATTTCCTGAGCATGGAATGTTCGAGAAATGGCTC-AATAGAATGGAT-AGTCTTGAA
129 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG-TCGAA-GGAATGGATCA-TCTTGAA
*
41413 TACTTCAAGGAACCAAAGTTATAAAA
191 TACTTTAAGGAACCAAAGTTAT--AA
* * * * * *
41439 AAAAACTTGTAAAAGTTTGACTAGTTTGTAAGTTCGTCCTAGAACCAAGAGACAAGCAATTCTCA
1 AAGAAC-TGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
41504 TGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAAGT-TATTAGACCAA
65 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT-TTAGACCAA
* * * *
41568 ATGATGCGA-TCCCCAAGCATGTAATGTTCGAAAAAGTTGTCGATGGAATGGATCATCTTGAATA
129 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TTGTCGAAGGAATGGATCATCTTGAATA
* * * * *
41632 CTCTCAGGAATCGAAGTTACAA
193 CTTTAAGGAACCAAAGTTATAA
** * * * *
41654 AAGTTCTGTTAAATGTTTCG-CGAGTTCGAAAGTTCTTCCAAG-ACAAAGAGAGAAACAATTCTC
1 AAGAACTG-TAAAAGTTT-GACTAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
41717 TCGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAGCAA
64 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
41782 ATGATGTGATTTCCAGAGCATGAAATGTTCGGAAAATTGCTTGAAGGAATGGATCATCTGGAATA
129 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG-TCGAAGGAATGGATCATCTTGAATA
** * *
41847 CTTTAACAAATCGAAGTTATAA
193 CTTTAAGGAACCAAAGTTATAA
* * * * * *
41869 AAGGACTCGTAATAGTTTGACTAGTTCGTAAGTTCGCCCGAGAACCAATAGAGAAACAATTCTCA
1 AAGAACT-GTAAAAGTTTGACTAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
41934 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAA
65 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * *
41999 TTATGCGATTT-CC-AACTTGGAATGTTCGAGAAATTG-CTGAAAGGAATGGATCACCTTGAATA
130 TGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGTC-G-AAGGAATGGATCATCTTGAATA
* *
42061 CTTTAACGAACCGAAGTTATAA
193 CTTTAAGGAACCAAAGTTATAA
* * * * * * *
42083 AAGGACTCGTAATAGTTTGACTAGTTTGTAAGTTCGTCCGAGAACCAATAGAGAAACAGTTCTCA
1 AAGAACT-GTAAAAGTTTGACTAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
42148 CGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAA
65 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * *
42213 TGATGCGATTTCGCAAGCGTGGAATGTTCGGAAAATAGCTCAAAGGAATGGAT-AGTCTTGAATA
130 TGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG-TCGAAGGAATGGATCA-TCTTGAATA
* *
42277 ATTCAAGGAACCAAAGTTAT-A
193 CTTTAAGGAACCAAAGTTATAA
* *
42298 AAGAACTCGTAAAAGTTTGACTAGTTC-ATAAGTTCGTCCTATAACC-A-AGAGAAACAATTCTC
1 AAGAACT-GTAAAAGTTTGACTAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * *
42360 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAGTTTTTAAACCGA
64 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
42425 ATGATACGA-TTCCCGAGCATGGAAAGTTCGGAAAATTGGTTGAAGGAATGGATCGTCTTTAATA
129 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT-GTCGAAGGAATGGATCATCTTGAATA
* *
42489 CTCTTAA-GAACCGAAGTTACAA
193 CT-TTAAGGAACCAAAGTTATAA
* * * * * *
42511 AAGAACTCTTAAATGTTTG-C-ATGTAT-GGATGTTCGTCCAAAAACCATGAGAGAAACAATTCT
1 AAGAACT-GTAAAAGTTTGACTA-GT-TCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
42573 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGATAAACTATTTA-ACCC
63 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA-CC
* * * * * * *
42637 AAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGACAAAGGAATGAATCACCTTTAA
127 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT-GTCGAAGGAATGGATCATCTTGAA
* * *
42702 TAGTTTAAGGCACCAAAGTTGTAA
191 TACTTTAAGGAACCAAAGTTATAA
* * * * *
42726 AAGAACTCATAAAAGTTTGACAAGTTTAGAAA-TTCATCCAAGAACCAAGAGAGAAACAATTTTC
1 AAGAACT-GTAAAAGTTTGACTAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * *
42790 ATGTAAA-CA-TTTTTAATTCAAAGACGAAAAGTT-TATTACAAAATAAAAAACTATTTGGACCA
64 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT-TTACAAAATGACAAACTATTTAGACCA
* * * ** *
42852 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTGAAGGAATGAATTGTCGTGAAT
128 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTG-TCGAAGGAATGGATCATCTTGAAT
* **
42917 GCTTTAAGGAACTGAAGTTATAA
192 ACTTTAAGGAACCAAAGTTATAA
* * * * *
42940 AAGAACTCATAAAAGCTTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
1 AAGAACT-GTAAAAGTTTGACTAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
43005 CGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTGTTTA-ATAAATGACAAACTATTTAGACCAA
65 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTATTTAGACCAA
* * * * * * *
43069 ATGATTCAATTTCTCGAGCATTGAGTGTTCGGAAAATTGGTCGAAGGAAT-GAT-AGTCCTGAAT
129 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT-GTCGAAGGAATGGATCA-TCTTGAAT
*
43132 ACTTTAAGCAACCAAAGTTATAA
192 ACTTTAAGGAACCAAAGTTATAA
* * * * *
43155 AAGAACTCATAAAAGTTTGACAAGTT-TAGAAGTTTGTCCAAGAACTAAGAGAGAAACAATTCTC
1 AAGAACT-GTAAAAGTTTGACTAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * *
43219 ATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACAAAATGAAAAACTATTTAGAACAA
64 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * ** * *
43282 ATGTTACGATTTCTTGAGCATGGAATGTTCGAAAAATGGTTGAAAGGAATGGAT-AGTCTTGAAT
129 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGTCG-AAGGAATGGATCA-TCTTGAAT
*
43346 ACTTCAAGGAACCAAAGTTATAAA
192 ACTTTAAGGAACCAAAGTTAT-AA
* * * * *
43370 AAAAACTCGTAAAAGTTTTACTAGTTAGTAAGTTCGTCCTAA-AACCAAGAGAGAAACAATTTTC
1 AAGAACT-GTAAAAGTTTGACTAGTTCGAAAGTTCGTCC-AAGAACCAAGAGAGAAACAATTCTC
* * * * ** *
43434 AGGTAAATAAGTTTTTAATTCGAAGACAAAAAGTTGTTTACAAAATAACAATGTTTTTAGACCAA
64 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
** * *
43499 ATGATATGA-TTCCCAAGCATGGAATGTTTGAAAAATTTGTCGAAGGAATG
129 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TTGTCGAAGGAATG
43549 AATTGTAACA
Statistics
Matches: 1777, Mismatches: 273, Indels: 120
0.82 0.13 0.06
Matches are distributed among these distances:
211 1 0.00
212 75 0.04
213 198 0.11
214 571 0.32
215 394 0.22
216 361 0.20
217 119 0.07
218 58 0.03
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (214 bp):
AAGAACTGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGTCGAAGGAATGGATCATCTTGAATACTT
TAAGGAACCAAAGTTATAA
Found at i:42138 original size:430 final size:430
Alignment explanation
Indices: 41223--43548 Score: 2523
Period size: 430 Copynumber: 5.4 Consensus size: 430
41213 CTCACATTAG
* * *
41223 AAGAACTCATAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
* * * * ** *
41288 TGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACAAAATGAAAAAGGATTTAGAACAAA
66 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * *
41351 TGTTGTGATTTC-CTGAGCATGGAATGTTC-GAGAAATGGCTC-AATAGAATGGATAGTCTTGAA
131 TGATGTGATTTCTCAGAGCATGGAATGTTCGGA-AAATTGCTCGAA-GGAATGGATAGTCTTGAA
* * * *
41413 TACTTCAAGGAACCAAAGTTATAAAAAAAAACTTGTAAAAGTTTGACTAGTTTGTAAGTTCGTCC
194 TACTTTAAGGAACCAAAGTTAT--AAAAGAACTCGTAAAAGTTTGACTAGTTAGTAAGTTCGTCC
* * *
41478 TAGAACCAAGAGACAAGCAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
257 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * ** *
41543 CAAAATAACAAAGT-TATTAGACCAAATGATGCGATCCCCAAGCATGTAATGTTCGAAAAAGTTG
322 CAAAATGACAAACTAT-TTAAACCAAATGATGCGATTTCC-AGCATGGAATGTTCGAAAAA-TTG
* * * * *
41607 -TCGATGGAATGGATCATCTTGAATACTCTCAGGAATCGAAGTTACAA
384 CT-GAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA
** * * * * * * *
41654 AAGTTCT-GTTAAATGTTTCG-CGAGTTCGAAAGTTCTTCC-AAGACAAAGAGAGAAACAATTCT
1 AAGAACTCG-TAAAAGTTT-GACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCT
* * *
41716 CTCGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAGCA
64 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
41781 AATGATGTGATTTC-CAGAGCATGAAATGTTCGGAAAATTGCTTGAAGGAATGGATCA-TCTGGA
129 AATGATGTGATTTCTCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGAT-AGTCTTGA
** * * * * * * *
41844 ATACTTTAACAAATCGAAGTTATAAAAGGACTCGTAATAGTTTGACTAGTTCGTAAGTTCGCCCG
193 ATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTAGTAAGTTCGTCCA
* *
41909 AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
258 AGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * *
41974 AAAATGACAAACTATTTAAACCAAATTATGCGATTTCCAACTTGGAATGTTCGAGAAATTGCTGA
323 AAAATGACAAACTATTTAAACCAAATGATGCGATTTCCAGCATGGAATGTTCGAAAAATTGCTG-
* *
42039 AAGGAATGGATCACCTTGAATACTTTAACGAACCGAAGTTATAA
387 AAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * * * * *
42083 AAGGACTCGTAATAGTTTGACTAGTTTGTAAGTTCGTCCGAGAACCAATAGAGAAACAGTTCTCA
1 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
*
42148 CGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAA
66 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * *
42213 TGATGCGATTTCGCA-AGCGTGGAATGTTCGGAAAATAGCTCAAAGGAATGGATAGTCTTGAATA
131 TGATGTGATTTCTCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATAGTCTTGAATA
* * * *
42277 ATTCAAGGAACCAAAGTTAT-AAAGAACTCGTAAAAGTTTGACTAGTTCA-TAAGTTCGTCCTAT
196 CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTT-AGTAAGTTCGTCCAAG
*
42340 AACC-A-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
260 AACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * * * * * * *
42403 AATGACAAAGTTTTTAAACCGAATGATACGATTCCCGAGCATGGAAAGTTCGGAAAATTGGTTGA
325 AATGACAAACTATTTAAACCAAATGATGCGATTTCC-AGCATGGAATGTTCGAAAAATT-GCTGA
* * *
42468 AGGAATGGATCGTCTTTAATACTCTTAA-GAACCGAAGTTACAA
388 AGGAATGGATCATCTTGAATACT-TTAAGGAACCGAAGTTATAA
* * * * * *
42511 AAGAACTCTTAAATGTTTG-CATGTATGGATGTTCGTCCAAAAACCATGAGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
* *
42575 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGATAAACTATTTA-ACCCAA
66 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA-CCAA
* * * ** * * * *
42639 ATAATGCGATTTCTC-GAGCATGGAATGTTCGAAAAATTGGACAAAGGAATGAATCA-CCTTTAA
130 ATGATGTGATTTCTCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGAT-AGTCTTGAA
* * * * * * *
42702 TAGTTTAAGGCACCAAAGTTGTAAAAGAACTCATAAAAGTTTGACAAGTTTAG-AAATTCATCCA
194 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAG-TTAGTAAGTTCGTCCA
* * *
42766 AGAACCAAGAGAGAAACAATTTTCATGTAAA-CA-TTTTTAATTCAAAGACGAAAAGTT-TATTA
258 AGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT-TTA
* * ** *
42828 CAAAATAAAAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGC
322 CAAAATGACAAACTATTTAAACCAAATGATGCGATTT-CC-AGCATGGAATGTTCGAAAAATTGC
* ** * * *
42893 TTGAAGGAATGAATTGTCGTGAATGCTTTAAGGAACTGAAGTTATAA
385 -TGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA
* * *
42940 AAGAACTCATAAAAGCTTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
*
43005 CGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTGTTTA-ATAAATGACAAACTATTTAGACCAA
66 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTATTTAGACCAA
* * * * *
43069 ATGAT-TCAATTTCTC-GAGCATTGAGTGTTCGGAAAATTGGTCGAAGGAAT-GATAGTCCTGAA
130 ATGATGT-GATTTCTCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATAGTCTTGAA
* * * *
43131 TACTTTAAGCAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTAG-AAGTTTGTCCA
194 TACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAG-TTAGTAAGTTCGTCCA
* * *
43195 AGAACTAAGAGAGAAACAATTCTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTAC
258 AGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * * * *
43258 AAAATGAAAAACTATTTAGAA-CAAATGTTACGATTTCTTGAGCATGGAATGTTCGAAAAATGGT
323 AAAATGACAAACTATTTA-AACCAAATGATGCGATTTC--CAGCATGGAATGTTCGAAAAATTGC
* *
43322 TGAAAGGAATGGAT-AGTCTTGAATACTTCAAGGAACCAAAGTTATAAA
385 TG-AAGGAATGGATCA-TCTTGAATACTTTAAGGAACCGAAGTTAT-AA
* * * * * * *
43370 AAAAACTCGTAAAAGTTTTACTAGTTAGTAAGTTCGTCCTAAAACCAAGAGAGAAACAATTTTCA
1 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
* * * * ** *
43435 GGTAAATAAGTTTTTAATTCGAAGACAAAAAGTTGTTTACAAAATAACAATGTTTTTAGACCAAA
66 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * *
43500 TGATATGA-TTCCCA-AGCATGGAATGTTTGAAAAATTTG-TCGAAGGAATG
131 TGATGTGATTTCTCAGAGCATGGAATGTTCGGAAAA-TTGCTCGAAGGAATG
43549 AATTGTAACA
Statistics
Matches: 1602, Mismatches: 244, Indels: 99
0.82 0.13 0.05
Matches are distributed among these distances:
426 1 0.00
427 251 0.16
428 174 0.11
429 441 0.28
430 583 0.36
431 34 0.02
432 113 0.07
433 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (430 bp):
AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
TGATGTGATTTCTCAGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATAGTCTTGAATA
CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTAGTAAGTTCGTCCAAGA
ACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
ATGACAAACTATTTAAACCAAATGATGCGATTTCCAGCATGGAATGTTCGAAAAATTGCTGAAGG
AATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAA
Found at i:43160 original size:857 final size:855
Alignment explanation
Indices: 41223--43535 Score: 2687
Period size: 857 Copynumber: 2.7 Consensus size: 855
41213 CTCACATTAG
*
41223 AAGAACTCATAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
1 AAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * ** *
41288 TGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACAAAATGAAAAAGGATTTAGAACAAA
66 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* *
41351 TG-TTGTGATTTCCTGAGCATGGAATGTTC-GAGAAA-TGGCTCAATAGAATGGATAGTCTTGAA
131 TGATT-CGATTTCC-GAGCATGGAATGTTCGGA-AAATTGG-TCAA-GGAATGGATAGTCTTGAA
* * *
41413 TACTTCAAGGAACCAAAGTTATAAAAAAAAACTTGTAAAAGTTTGACTAGTTTGTAAGTTCGTCC
191 TACTTCAAGGAACCAAAGTTAT--AAAAGAACTCGTAAAAGTTTGACTAGTTTATAAGTTCGTCC
41478 TAGAACCAAGAGACAAGCAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
254 TAGAACCAAGAGA-AA-CAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * * * *
41543 CAAAATAACAAAGTTATTAGACCAAATGATGCGATCCCCAAGCATGTAATGTTCGAAAAAGTT-G
317 CAAAATGACAAAGTTTTTAAACCAAATGATACGATTCCCGAGCATGGAATGTTCGGAAAA-TTGG
* * * * * ** *
41607 TCGATGGAATGGATCATCTTGAATACTCTCAGGAATCGAAGTTACAAAAGTTCTGTTAAATGTTT
381 TTGAAGGAATGGATCGTCTTGAATACTCTCAAGAACCGAAGTTACAAAAGAACTCTTAAATGTTT
* * * * *
41672 CGCGA-GTTCGAAAGTTCTTCCAAGACAAAGAGAGAAACAATTCTCTCGTAAATAAGTTTTTAAT
446 -GC-ATGTTAGAAAGTTCGTCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * *
41736 TCCAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAGCAAATGATGTGATTTCCAGAGC
509 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTCCAGAGC
* *** * * * *
41801 ATGAAATGTTCGGAAAATTGCTTGAAGGAATGGATCATCTGGAATACTTTAACAAATCGAAGTTA
574 ATGAAATGTTCGAAAAATTGCACAAAGGAATGAATCACCTGGAATACTTTAACAAACCAAAGTTA
* * * * * * * * *
41866 TAAAAGGACTCGTAATAGTTTGACTAGTTCGTAAGTTCGCCCGAGAACCAATAGAGAAACAATTC
639 TAAAAGAACTCATAAAAGTTTGACAAGTTAGTAAATTCACCCAAGAACCAAGAGAGAAACAATTC
* *
41931 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACC
704 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAAACTATTTAAACC
* * * * * *
41996 AAATTATGCGATTTCCAACTTGGAATGTTCGAGAAATTGCTGAAAGGAATGGATCACCTTGAATA
769 AAATGATGCGATTTCCAACATGGAATGTTCAAAAAATTGCTGAAAGGAATGAATCACCGTGAATA
42061 CTTTAACGAACCGAAGTTATAA
834 CTTTAACGAACCGAAGTTATAA
* * * * * * * *
42083 AAGGACTCGTAATAGTTTGACTAGTTTGTAAGTTCGTCCGAGAACCAATAGAGAAACAGTTCTCA
1 AAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
42148 CGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAA
66 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * *
42213 TGATGCGATTTCGCAAGCGTGGAATGTTCGGAAAATAGCTCAAAGGAATGGATAGTCTTGAATAA
131 TGATTCGATTTC-CGAGCATGGAATGTTCGGAAAATTGGTC-AAGGAATGGATAGTCTTGAATAC
* *
42278 TTCAAGGAACCAAAGTTAT-AAAGAACTCGTAAAAGTTTGACTAGTTCATAAGTTCGTCCTATAA
194 TTCAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTATAAGTTCGTCCTAGAA
*
42342 CCAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
259 CCAAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* *
42407 ACAAAGTTTTTAAACCGAATGATACGATTCCCGAGCATGGAAAGTTCGGAAAATTGGTTGAAGGA
324 ACAAAGTTTTTAAACCAAATGATACGATTCCCGAGCATGGAATGTTCGGAAAATTGGTTGAAGGA
* *
42472 ATGGATCGTCTTTAATACTCTTAAGAACCGAAGTTACAAAAGAACTCTTAAATGTTTGCATG-TA
389 ATGGATCGTCTTGAATACTCTCAAGAACCGAAGTTACAAAAGAACTCTTAAATGTTTGCATGTTA
* * *
42536 TGGATGTTCGTCCAAAAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
454 -GAAAGTTCGTCC-AAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * *
42601 CAAAAGTTGTTTAGAAAATGATAAACTATTTA-ACCCAAATAATGCGATTTCTC-GAGCATGGAA
517 CAAAAGTTGTTTACAAAATGACAAACTATTTAGA-CCAAATAATGCGATTTC-CAGAGCATGAAA
* ** * *** *
42664 TGTTCGAAAAATTGGACAAAGGAATGAATCACCTTTAATAGTTTAAGGCACCAAAGTTGTAAAAG
580 TGTTCGAAAAATTGCACAAAGGAATGAATCACCTGGAATACTTTAACAAACCAAAGTTATAAAAG
* * *
42729 AACTCATAAAAGTTTGACAAGTTTAG-AAATTCATCCAAGAACCAAGAGAGAAACAATTTTCATG
645 AACTCATAAAAGTTTGACAAG-TTAGTAAATTCACCCAAGAACCAAGAGAGAAACAATTCTCACG
* * **
42793 TAAA-CA-TTTTTAATTCAAAGACGAAAAGTT-TATTACAAAATAAAAAACTATTTGGACCAAAT
709 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT-TTACAAAATAAAAAACTATTTAAACCAAAT
* *** *
42855 GATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTTG-AAGGAATGAATTGTCGTGAATGC
773 GATGCGATTT-CC-AACATGGAATGTTCAAAAAATTGC-TGAAAGGAATGAATCACCGTGAATAC
* *
42919 TTTAAGGAACTGAAGTTATAA
835 TTTAACGAACCGAAGTTATAA
* * *
42940 AAGAACTCATAAAAGCTTGACAAGTTCGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCA
1 AAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
43005 CGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTGTTTA-ATAAATGACAAACTATTTAGACCAA
66 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTATTTAGACCAA
* * * *
43069 ATGATTCAATTTCTCGAGCATTGAGTGTTCGGAAAATTGGTCGAAGGAAT-GATAGTCCTGAATA
130 ATGATTCGATTTC-CGAGCATGGAATGTTCGGAAAATTGGTC-AAGGAATGGATAGTCTTGAATA
* * * * * * *
43133 CTTTAAGCAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTAGAAGTTTGTCCAAGA
193 CTTCAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTATAAGTTCGTCCTAGA
* * *
43198 ACTAAGAGAGAAACAATTCTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACAAA
258 AC-CA-AGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * * * ** *
43261 ATGAAAAACTATTTAGAA-CAAATGTTACGATTTCTTGAGCATGGAATGTTC-GAAAAATGGTTG
321 ATGACAAAGTTTTTA-AACCAAATGATACGA-TTCCCGAGCATGGAATGTTCGGAAAATTGGTTG
* * * * * *
43324 AAAGGAATGGATAGTCTTGAATACT-TCAAGGAACCAAAGTTATAAAAAAAACTCGTAAAAGTTT
384 -AAGGAATGGATCGTCTTGAATACTCTCAA-GAACCGAAGTTA-CAAAAGAACTCTTAAATGTTT
* * * *
43388 -TACTAGTTAGTAAGTTCGTCCTAAAACCAAGAGAGAAACAATTTTCAGGTAAATAAGTTTTTAA
446 GCA-T-GTTAGAAAGTTCGTCC-AAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * ** * * ** *
43452 TTCGAAGACAAAAAGTTGTTTACAAAATAACAATGTTTTTAGACCAAATGATATGATTCCCA-AG
508 TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTCCAGAG
* *
43516 CATGGAATGTTTGAAAAATT
573 CATGAAATGTTCGAAAAATT
43536 TGTCGAAGGA
Statistics
Matches: 1233, Mismatches: 188, Indels: 65
0.83 0.13 0.04
Matches are distributed among these distances:
854 1 0.00
855 60 0.05
856 49 0.04
857 669 0.54
858 63 0.05
859 110 0.09
860 158 0.13
861 4 0.00
862 112 0.09
863 7 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (855 bp):
AAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAA
TGATTCGATTTCCGAGCATGGAATGTTCGGAAAATTGGTCAAGGAATGGATAGTCTTGAATACTT
CAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTATAAGTTCGTCCTAGAACC
AAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
AAAGTTTTTAAACCAAATGATACGATTCCCGAGCATGGAATGTTCGGAAAATTGGTTGAAGGAAT
GGATCGTCTTGAATACTCTCAAGAACCGAAGTTACAAAAGAACTCTTAAATGTTTGCATGTTAGA
AAGTTCGTCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
AGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTCCAGAGCATGAAATGTTCG
AAAAATTGCACAAAGGAATGAATCACCTGGAATACTTTAACAAACCAAAGTTATAAAAGAACTCA
TAAAAGTTTGACAAGTTAGTAAATTCACCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAAAAAACTATTTAAACCAAATGATGCGAT
TTCCAACATGGAATGTTCAAAAAATTGCTGAAAGGAATGAATCACCGTGAATACTTTAACGAACC
GAAGTTATAA
Found at i:44409 original size:20 final size:20
Alignment explanation
Indices: 44377--44416 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
44367 ACCGTTGACC
44377 GACTATTGACCGTTGACTTT
1 GACTATTGACCGTTGACTTT
44397 GACT-TTGACCCGTTGACTTT
1 GACTATTGA-CCGTTGACTTT
44417 TTTCGAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (20 bp):
GACTATTGACCGTTGACTTT
Found at i:46874 original size:3 final size:3
Alignment explanation
Indices: 46858--46898 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
46848 CAGATTTACT
46858 TTA TT- TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
46899 ACTTTGACAG
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.11
3 32 0.89
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:49783 original size:216 final size:217
Alignment explanation
Indices: 47174--51719 Score: 4272
Period size: 216 Copynumber: 21.2 Consensus size: 217
47164 TCAGGAATTA
* * * * **
47174 AAGTTACAAAAGAACTC-TAATAGTATGAC-TAGTTCGTAAGTTTGTCGGAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * *** *
47237 ACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACTAATTTTTTCTTTTTTACAAAATGACAAA
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA----AAGTTGTTTACAAAATGACAAA
* * * * *
47302 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATG-CTCGAAAAATGGCTCAAAGGAATG
127 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGG-TCGAAGGAATG
* *
47366 GAT-AGCCTTGAATACTTTAAGGAACCA
191 GATCA-TCTTGAATACTTTAAGGAACCG
* * * * * *
47393 AAGTTATAACAGAACTTGTAAAAGTTTGAC-TAGTTTGTAATTTCGTCCTAGAACCAAGAGACAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * * *
47457 ACAATTCTCACGTGAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGAC--AGTTT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * ** * ** * ** * *
47520 TTAGACGAAATGATGTGA-CTCCCGAGCATTAAAAGTCCGAAAAATTGGTCGAACAAATGTATCG
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATCA
** * **
47584 TCTTGAATACCCTCAGGATTCG
196 TCTTGAATACTTTAAGGAACCG
* * * *
47606 AAGTTACAAAAGAACTCTTAAATGTTTGGCA-AGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTC-GTAAGTTCGTCCAAGAACCAAGAGAGA
* * *
47669 AACAATTCTCATGTAAATAAATTTTTAATTCAAAGACGAAAAGTTGTTTACAAAATGACAAACTA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * * *
47734 TTTAGACCGAATGAAGCGATTTCTCGAGCATAGAATGTTTGGAAAA-TGGCTCAAAGGAATGAAT
130 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGG-TCGAAGGAATGGAT
**
47798 -AGTCTTGAATACTTTAAGGAACAA
194 CA-TCTTGAATACTTTAAGGAACCG
* * * * *
47822 AAGTTATAAAAGAACTCATTAAAGATTGAC-TAGTTTGTAAGTTCGTCCTAGAACC-AGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* *
47885 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
*** * * * * *
47950 TTAGAATGAATGATACGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCG
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATCA
* * * * *
48015 TCTTTAATGCTTTCAGAAACTG
196 TCTTGAATACTTTAAGGAACCG
* * * * * *
48037 AGGTTATAAAAGAACTTGTAAATGTTTGATA-AGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* *
48101 ACAA-T-T--C-TAAATAAGTTTTTAATTCAAAGACCAAATGTTGTTTACAAAATAACAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * * *
48161 TTAGACCAAATAATGCGATTT--CAAGCTTGGAATGTTT-GATATATTGCTCAAAGGAATGGATC
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGA-AAATTGGTCGAAGGAATGGATC
* * *
48223 GTCTTGAATACTTTAATGAACCA
195 ATCTTGAATACTTTAAGGAACCG
* * * * * **
48246 AAGTTATGAAAGGACTCGTAATAGTTTGAC-TGGTTCGTAAGTTCGTCCGAGAACCACTAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
** * *
48310 ACAATTCTCACGTAAATAAGTTTTTAATTCATTGACGAAAATTTGTTTACAAAATGACAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * *
48375 TTAGACCAAATGATGCAATTTCCCAAGCTTGGAA----TGGAAAA-TGGCTCAAAGGAATGGAT-
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGG-TCGAAGGAATGGATC
*
48434 AGTCTTGAATACTTCAAGGAACC-
195 A-TCTTGAATACTTTAAGGAACCG
* * * *
48457 ACAGTTATAAAAGTACTCGTAAAAGTTTGA-TTAGTTCGTAAGCTCGTCCTAGAACCAAGA-A-A
1 A-AGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* * * *
48519 AATAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAAGTT
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * ** ** ** *
48584 TTTAGATCGAATGATATGA-TTCCCGAGCATGGAA-ACTTCAAAAGATTGGTCGAAAGAATGGAT
130 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAA-ATTGGTCGAAGGAATGGAT
* * * *
48647 CGTCTTGAATACTCTCAGGAACTG
194 CATCTTGAATACTTTAAGGAACCG
* * * * * * * *
48671 AAGTTAAAAAAGAACTCTTAAATGTTTGGCA-AGTACAG-ATGTTCGTCCAAAAACCATGAGAGA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTC-GTAAGTTCGTCCAAGAACCAAGAGAGA
* * * **
48734 AACAA-TCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAATTTGTTTAGAAAATGTTAAACTA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * * * * * ** * *
48798 TTCAGCCCCAATAATGTGATTTCCCGAGCATGAAATGTTCGAAAAATTGCACAAAGGAATGGGTC
130 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATC
* * *
48863 ACCTTTAATAGTTTAAGGAACCG
195 ATCTTGAATACTTTAAGGAACCG
* * *
48886 AAGTTATAAAAGAACTCATAAAAGTTTGACA-AGTTTAG-AAGTTGGTCCAAGAACCAAGAGAGA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAG-TTCGTAAGTTCGTCCAAGAACCAAGAGAGA
* * * * * *
48949 AACAATTGTCATGTAAAT-A-TTTTTAAATCAAAGA-CGAAAGTTGATTACAAAATGAAAAACTA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* * * * * *
49011 TTTAGACTAAATGATGCGATTTCTCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGAATGGATC
130 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATC
* **
49076 GTCTTGAATACTTTAAGGAATTG
195 ATCTTGAATACTTTAAGGAACCG
* * * * * * *
49099 AAGTTATAAAAGAACTCATAAAAGCTTGACA-AGTTCGAAAGTTCAG-CTAAGAACCCAGACAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTC-GTCCAAGAACCAAGAGAGA
* * * *
49162 AACAATTCTCACATAAATAAGTTTTTAACTCAAAGAGCAAAAGTTTTTTTTTTTACAAAATGACA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-----TTGTTTACAAAATGACA
* * ** *
49227 AACTATTTAGACCAAATCATGCAATTTTTCGAGCATGGAATGTTTGAAAAATTGGTCGAA-GAAT
125 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAAT
** *
49291 AGGATCGGCTTGAATAATTTAAGGAACCG
190 -GGATCATCTTGAATACTTTAAGGAACCG
* * *
49320 AAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGTTCGAAAGTTCATCCAAAAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* *
49384 ACAATTCTCACATAAATAAGTTTTTAATTCAAAG------A-TTGTTTACAAAATGACAAGCTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * ** * * *
49442 TTAGACCAAATAATACGATTTTTCGAGCATGGAATGTTCGAAAAATTGGTCGAA-CAATAGGATC
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAAT-GGATC
*
49506 GA-CTTGAATAATTTAAGGAACCG
195 -ATCTTGAATACTTTAAGGAACCG
* * * * *
49529 AAGTTACAAAAGAACTCGTAAAAGTTTGACA-AGTTCGAAAGTTCATCCAAAAACCAAGACAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * * *
49593 ATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGATGTTTACAAAATTAAAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
*** * *
49658 TTAGAATGAATGATGTGGTTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATCA
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATCA
* * * * *
49723 TCTTTAATGCTCTCAGAAACCG
196 TCTTGAATACTTTAAGGAACCG
* *
49745 AAGTTATAAAAGAACTCGTAAATGTTTGACAT-GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * *
49809 ACAATTCTCACATAAATAA-TTTTCAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACAAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
*
49873 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAATATT-G-CAGAAAGGAATGGA
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAA-ATTGGTC-G-AAGGAATGGA
** * * * *
49935 TCGCCTTTAATAGTTTAAAGAACCA
193 TCATCTTGAATACTTTAAGGAACCG
* * * * * * *
49960 AAGTTATAAAGGAACTTGTAAAAGTTTGAC-TAGTTTGTAAGATCATCCTAGAACCAAGAGAAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * * * * *
50024 ACAATTCTTATGTACATAAGTTTTTAATTTAAAAACCAAAAGTTGTTTACAAAATGACAAAGT-T
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * * * *
50088 TTAGACCAAATGATGCGA-TTCCCGAGCTTTGAAAGTTCGAAAAATTGGTAGAAGTAATGGATCA
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATCA
* * **
50152 TCTTGAATACTCTCAGGATTCG
196 TCTTGAATACTTTAAGGAACCG
* * * * * * * * *
50174 AATTTACAAAAAAACTCTTAAATGTTTGGCA-AGTTCGGAAGTTCGTCCAAGAACCAAGACAAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
**
50238 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAGGAAAAGTTGTTTA-ATAAATGACAAACTA
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTA
* * * * * * *
50302 CTTAGACGAAATGATGCGATTTCTCGAGCATTGAATGTTT-GAAAAATGGCTCAAAGGAATGGGT
130 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGG-TCGAAGGAATGGAT
*
50366 -AGTCTTGAATACTTTAAGGAACCA
194 CA-TCTTGAATACTTTAAGGAACCG
* * * * *
50390 AAGTTATAAAAGAACTCATAAAAGTTTGAC-TAGTTTGTAAGTTCTTCCTAGAACCAAGAGACAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * * * * *
50454 ACAATTTTCACGTAAATAAGTTTTTAATCCCAAG-CCAAAAGTTCTTTACAAAATGATAAATTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* ** *
50518 TTAGACCAAATTATGCGATTT-CC-AGCATGGAATGTTT-GAGAAATTACTCAAAGGAATGGATC
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGA-AAATTGGTCGAAGGAATGGATC
* *
50580 ACCTTAAATACTTTAAGGAACCG
195 ATCTTGAATACTTTAAGGAACCG
* * * * **
50603 AAGTTATAAAAGAGCACGTAATAGTTTGAC-TAGTTCATAAGTTCGTCTGAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * * * * *
50667 ATAATTCTCACGTTAAGAAGTTTTTAATTCAAAGA-CAGAAATTTGTGTACAAAAGGACAAACTA
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATGACAAACTA
* * * * * * * *
50731 TTTAAACAAAATGATACGATCTCCCGAGCATGGAATG-TTCGAAAAATGGCTCAAAGGAATGTAT
130 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGG-TCGAAGGAATGGAT
* * * *
50795 -AGCCTTGAAAACTTCAAGGAACCA
194 CA-TCTTGAATACTTTAAGGAACCG
* * * * *
50819 AAGTTATAAAAGAACTCATAAAAGTTTGAC-TAGTTCCTAAGTTTGTCCTAGAACGAAGAG-G-A
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * * * * *
50881 ACAATTCTCATGTAAATAAGTTTTTAATTCGAACACCAAAAGTTGTTTACAAAGTG-TAAACAAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-
** * * * * * * * *
50945 TTTAGACTGAATGATACGA-TTACCGAGCATGGAAAGTTCGAAAAATAGGTTGAAGGAATCGATC
130 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATC
* * * *
51009 GTCTTGAATACTCTCAGGAACCA
195 ATCTTGAATACTTTAAGGAACCG
* * * * * * *
51032 AAGTTACAAAAGAACTCTTAAATGTTTGGCA-AGTAT-GGATGTTCGTCCAA-AACCCATGAGAG
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGT-TCGTAAGTTCGTCCAAGAA-CCAAGAGAG
* * * * * *
51094 AAACAATTCTTACGTAAATAAGTGTTTAGTTTAAAGGCCAAAATTTGTTTACAAAATGACAAACT
64 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * *
51159 ATTTAGACCAAATGATGCGATTTTCGGAGCATGGAATGTTTGGAAAA-TGGCTCAAAGGAATGGA
129 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGG-TCGAAGGAATGGA
* *
51223 T-AGTCTTGAATACTCTAAGGAACCA
193 TCA-TCTTGAATACTTTAAGGAACCG
* * * * *
51248 AAGTTTTAAAAGAACTTGTAAAAGTTTGAC-TAGTTAGTAAGTTCCTCCTAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* ** * *
51312 ACAATTCTCACGTAAATAAGTTTTTAATTCCAAGACCAAAAGTTCATTACAAAATGATAAACCAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * *
51377 TTAGACCAAATTATGCGATTT-CC-AGCATGGAATG-TTCGAGAAATT-GTTGAAAGGAATGGAT
131 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGA-AAATTGGTCG-AAGGAATGGAT
** * *
51438 CGCCTTTAATACTGTAAGGAACCG
194 CATCTTGAATACTTTAAGGAACCG
* * * * * * * *
51462 TAGTTA-AAAAGATCACGTAATAGTTTAAC-TAGTTCGTAAGTTCATTCGAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
* * **
51525 ATAATTCTCATGTAAATAAGTTTTTAATTCAAAGAAGAAAAGTTGTTTA-ATAAATGACAAACTA
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA-AAATGACAAACTA
* * * * *
51589 TATAGACCAAATGATGCAATTTCCCGAGCATTGAATGTTCGGGAAA-TGGCTC-AAGGGAATGGA
130 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGG-TCGAA-GGAATGGA
*
51652 T-AGTCTTGAATACTTTAAGGAACCA
193 TCA-TCTTGAATACTTTAAGGAACCG
* * * *
51677 AAGTTATGAAAGAACTAGTAAAAGTTTGTC-TAGTTTGTAAGTT
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTT
51720 TTCTACAAAA
Statistics
Matches: 3528, Mismatches: 677, Indels: 247
0.79 0.15 0.06
Matches are distributed among these distances:
208 1 0.00
209 310 0.09
210 73 0.02
211 71 0.02
212 96 0.03
213 721 0.20
214 498 0.14
215 708 0.20
216 775 0.22
217 5 0.00
219 14 0.00
220 77 0.02
221 179 0.05
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (217 bp):
AAGTTATAAAAGAACTCGTAAAAGTTTGACATAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAA
ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGGTCGAAGGAATGGATCA
TCTTGAATACTTTAAGGAACCG
Found at i:50777 original size:429 final size:430
Alignment explanation
Indices: 47174--51719 Score: 4609
Period size: 429 Copynumber: 10.6 Consensus size: 430
47164 TCAGGAATTA
* * * * * **
47174 AAGTTACAAAAGAACTC-TAATAGTATGACTAGTTCGTAAGTTTGTCGGAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAA-AGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAA
* *** *
47238 CAATTCTCATGTAAATAAGTTTTTAATTCAAAGACTA-ATTTTTTCTTTTTTACAAAATGACAAA
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AGA----AAGTTGTTTACAAAATGACAAA
* *
47302 CTATTTAGACCAAATGATGCGATTTCCAGAGCATGGAATGCTCGAAAAATGGCTCAAAGGAATGG
125 CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGG
* * **
47367 ATAGCCTTGAATACTTTAAGGAACCAAAGTTATAACAGAACTTGTAAAAGTTTGACTAGTTTGTA
190 ATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTA
* * * *
47432 ATTTCGTCCTAGAACCAAGAGACAAACAATTCTCACGTGAATAAGTTTTTAATTCGAAGACCAAA
255 AGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * * * ** * *
47497 AGTTGTTTACAAAATG--ACAGTTTTTAGACGAAATGATGTGACTCCCGAGCATTAAAAGTCCGA
320 AGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGA
* ** * * ** * **
47560 AAAATTGGTCGAACAAATGTATCGTCTTGAATACCCTCAGGATTCG
385 AAAATTGGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
* * * *
47606 AAGTTACAAAAGAACTCTTAAATGTTTGGCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAA-GTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAA
* *
47671 CAATTCTCATGTAAATAAATTTTTAATTCAAAGAC-GAAAAGTTGTTTACAAAATGACAAACTAT
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAG-AAAGTTGTTTACAAAATGACAAACTAT
* * * * * * *
47735 TTAGACCGAATGAAGCGATTTCTCGAGCATAGAATGTTTGGAAAATGGCTCAAAGGAATGAATAG
129 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAG
* * *
47800 TCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCATTAAAGATTGACTAGTTTGTAAGTT
194 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGTT
47865 CGTCCTAGAACC-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
259 CGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * *** *
47929 GTTTACAAAATTAAAAACTATTTAGAATGAATGATACGATTTCTCGAGCATGGAATGTTCGAAAA
324 GTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAATGTTCGAAAA
* * * * * * *
47994 ATTGGTCGAAGGAATGGATCGTCTTTAATGCTTTCAGAAACTG
388 ATTGGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
* * * ** *
48037 AGGTTATAAAAGAACTTGTAAATGTTTGATAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAA-GTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAA
* *
48102 CAA-T-T--C-TAAATAAGTTTTTAATTCAAAGACCA-AATGTTGTTTACAAAATAACAAACTAT
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAGAAAGTTGTTTACAAAATGACAAACTAT
* * * * * * * *
48161 TTAGACCAAATAATGCGATTT--CAAGCTTGGAATGTTTGATATATTGCTCAAAGGAATGGATCG
129 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAG
* * * * * * *
48224 TCTTGAATACTTTAATGAACCAAAGTTATGAAAGGACTCGTAATAGTTTGACTGGTTCGTAAGTT
194 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGTT
* ** ** * *
48289 CGTCCGAGAACCACTAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCATTGACGAAAATTT
259 CGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * *
48354 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCAAGCTTGGAATG---G-AAA
324 GTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATGTTCGAAAA
*
48415 A-TGGCTCAAAGGAATGGAT-AGTCTTGAATACTTCAAGGAACC-
388 ATTGG-TCAAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCG
* ** * * *
48457 ACAGTTATAAAAGTACTCGTAAAAGTTTGATTAGTTCGTAAGCTCGTCCTAGAACCAAGA-A-AA
1 A-AGTTATAAAAGAACTCGT-AAAGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAA
* * * *
48520 ATAATTCTCACGTAAATAAGTTTTTAATTCGAAGACCA-AAAGTTGTTTACAAAATGACAAAGTT
64 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAGAAAGTTGTTTACAAAATGACAAACTA
* * ** **
48584 TTTAGATCGAATGATATGA-TTCCCGAGCATGGAAACTTC-AAAAGATTGG-TCGAAA-GAATGG
128 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA-A-TGGCTC-AAAGGAATGG
* * * ** * * * * * **
48645 ATCGTCTTGAATACTCTCAGGAACTGAAGTTAAAAAAGAACTCTTAAATGTTTGGCAAGTACAG-
190 ATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGT-TTGT
* * * * *
48709 ATGTTCGTCCAAAAACCATGAGAGAAACAA-TCTCACGTAAATAAGTTTTTAATTCAAAGACGAA
254 AAGTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * * * *
48773 AATTTGTTTAGAAAATGTTAAACTATTCAGCCCCAATAATGTGATTTCCCGAGCATGAAATGTTC
319 AAGTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATGTTC
** * * * *
48838 GAAAAATTGCACAAAGGAATGGGTCACCTTTAATAGTTTAAGGAACCG
383 GAAAAATTGGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
* * * *
48886 AAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTAGAAGTTGGTCCAAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGT-AAAGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * * *
48951 CAATTGTCATGTAAAT-A-TTTTTAAATCAAAGAC-GAAAGTTGATTACAAAATGAAAAACTATT
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAGAAAGTTGTTTACAAAATGACAAACTATT
* * * * * *
49013 TAGACTAAATGATGCGATTTCTCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
130 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAGT
*** * * * *
49078 CTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGAAAGTTC
195 CTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGTTC
* * * * * *
49143 AG--CTAAGAACCCAGACAAAAACAATTCTCACATAAATAAGTTTTTAACTCAAAGAGCAAAAGT
260 -GTCCT-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-
* * * * *
49206 TTTTTTTTTTACAAAATGACAAACTATTTAGACCAAATCATGCAATTTTTCGAGCATGGAATGTT
322 ----TTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAATGTT
* * ** *
49271 TGAAAAATTGGTCGAA-GAATAGGATCGGCTTGAATAATTTAAGGAACCG
382 CGAAAAATTGGTCAAAGGAAT-GGATCATCTTGAATACTTTAAGGAACCG
* *
49320 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCATCCAAAAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGT-AAAGTTTGACAAGTTC-ATAAGTTCGTCCAAGAACCAAGAGAGAA
* *
49384 ACAATTCTCACATAAATAAGTTTTTAATTC--A-A-AG--A-TTGTTTACAAAATGACAAGCTAT
64 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAGAAAGTTGTTTACAAAATGACAAACTAT
* * ** * *
49442 TTAGACCAAATAATACGATTTTTCGAGCATGGAATGTTCGAAAAATTGG-TCGAA-CAATAGGAT
129 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TGGCTCAAAGGAAT-GGAT
* * * * * * * * *
49505 CGACTTGAATAATTTAAGGAACCGAAGTTACAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
192 AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAG
* * * * *
49570 TTCATCCAAAAACCAAGACAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
257 TTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *** * * * *
49635 ATGTTTACAAAATTAAAAACTATTTAGAATGAATGATGTGGTTTCCCGAGCATGGAATGTTTGGA
322 TTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATGTTCGAA
* * * * * *
49700 AAATTGGTCGAAGGAATGGATCATCTTTAATGCTCTCAGAAACCG
386 AAATTGGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
*
49745 AAGTTATAAAAGAACTCGTAAATGTTTGACATGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAA-GTTTGACAAGTTC-ATAAGTTCGTCCAAGAACCAAGAGAGAA
* * *
49809 ACAATTCTCACATAAATAA-TTTTCAATTCAAAGACCA-AAAGTTGTTTACAAAATGACAAACAA
64 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAGAAAGTTGTTTACAAAATGACAAACTA
* * ** *
49872 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAATATTGCAGAAAGGAATGGATC
128 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATA
* * * * * ** *
49937 GCCTTTAATAGTTTAAAGAACCAAAGTTATAAAGGAACTTGTAAAAGTTTGACTAGTTTGTAAGA
193 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGT
* * * * * * *
50002 TCATCCTAGAACCAAGAGAAAAACAATTCTTATGTACATAAGTTTTTAATTTAAAAACCAAAAGT
258 TCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * * * *
50067 TGTTTACAAAATGACAAAGT-TTTAGACCAAATGATGCGATTCCCGAGCTTTGAAAGTTCGAAAA
323 TGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAA
* * * **
50131 ATTGGT-AGAAGTAATGGATCATCTTGAATACTCTCAGGATTCG
388 ATTGGTCA-AAGGAATGGATCATCTTGAATACTTTAAGGAACCG
* * * * * ** * *
50174 AATTTACAAAAAAACTCTTAAATGTTTGGCAAGTTCGGAAGTTCGTCCAAGAACCAAGACAAAAA
1 AAGTTATAAAAGAACTCGTAAA-GTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAA
*
50239 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-GGAAAAGTTGTTTA-ATAAATGACAAACTA
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAG-AAAGTTGTTTACA-AAATGACAAACTA
* * * * * *
50302 CTTAGACGAAATGATGCGATTTCTCGAGCATTGAATGTTTGAAAAATGGCTCAAAGGAATGGGTA
128 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATA
50367 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGT
193 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGT
* * * * *
50432 TCTTCCTAGAACCAAGAGACAAACAATTTTCACGTAAATAAGTTTTTAATCCCAAG-CCAAAAGT
258 TCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * * *
50496 TCTTTACAAAATGATAAATTATTTAGACCAAATTATGCGATTTCC-AGCATGGAATGTTTGAGAA
323 TGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAA
** * *
50560 ATTACTCAAAGGAATGGATCACCTTAAATACTTTAAGGAACCG
388 ATTGGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
* * * **
50603 AAGTTATAAAAGAGCACGTAATAGTTTGACTAGTTCATAAGTTCGTCTGAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAA-AGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * * * *
50668 TAATTCTCACGTTAAGAAGTTTTTAATTCAAAGACAGAAATTTGTGTACAAAAGGACAAACTATT
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAGAAAGTTGTTTACAAAATGACAAACTATT
* * * * * *
50733 TAAACAAAATGATACGATCTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGTATAGC
130 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAGT
* * ** *
50798 CTTGAAAACTTCAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTCCTAAGTTT
195 CTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGTTC
* * * *
50863 GTCCTAGAACGAAGAG-G-AACAATTCTCATGTAAATAAGTTTTTAATTCGAACACCAAAAGTTG
260 GTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * ** * * *
50926 TTTACAAAGTG-TAAACAATTTTAGACTGAATGATACGATTACCGAGCATGGAAAGTTCGAAAAA
325 TTTACAAAATGATAAACTA-TTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAAA
* ** * * * * *
50990 TAGGTTGAAGGAATCGATCGTCTTGAATACTCTCAGGAACCA
389 TTGGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
* * * * *
51032 AAGTTACAAAAGAACTCTTAAATGTTTGGCAAG-T-ATGGATGTTCGTCCAA-AACCCATGAGAG
1 AAGTTATAAAAGAACTCGTAAA-GTTTGACAAGTTCAT--AAGTTCGTCCAAGAA-CCAAGAGAG
* * * * * *
51094 AAACAATTCTTACGTAAATAAGTGTTTAGTTTAAAGGCCA-AAATTTGTTTACAAAATGACAAAC
62 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACAGAAAGTTGTTTACAAAATGACAAAC
* * * *
51158 TATTTAGACCAAATGATGCGATTTTCGGAGCATGGAATGTTTGGAAAATGGCTCAAAGGAATGGA
126 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGA
* * ** *
51223 TAGTCTTGAATACTCTAAGGAACCAAAGTTTTAAAAGAACTTGTAAAAGTTTGACTAGTTAGTAA
191 TAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAA
* *
51288 GTTCCTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCCAAGACCAAAA
256 GTTCGTCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
** * * *
51353 GTTCATTACAAAATGATAAACCATTTAGACCAAATTATGCGATTTCC-AGCATGGAATGTTCGAG
321 GTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAA
* * ** * *
51417 AAATTGTTGAAAGGAATGGATCGCCTTTAATACTGTAAGGAACCG
386 AAATTGGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
* * * * * * * * *
51462 TAGTTA-AAAAGATCACGTAATAGTTTAACTAGTTCGTAAGTTCATTCGAGAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAA-AGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAA
* *
51526 TAATTCTCATGTAAATAAGTTTTTAATTCAAAGA-AGAAAAGTTGTTTA-ATAAATGACAAACTA
65 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAG-AAAGTTGTTTACA-AAATGACAAACTA
* * * ** *
51589 TATAGACCAAATGATGCAATTTCCCGAGCATTGAATGTTCGGGAAATGGCTCAAGGGAATGGATA
128 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATA
* *
51654 GTCTTGAATACTTTAAGGAACCAAAGTTATGAAAGAACT-AGTAAAAGTTTGTCTAGTTTGTAAG
193 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCA-TAAAAGTTTGACTAGTTTGTAAG
51718 TT
257 TT
51720 TTCTACAAAA
Statistics
Matches: 3407, Mismatches: 605, Indels: 207
0.81 0.14 0.05
Matches are distributed among these distances:
419 5 0.00
420 6 0.00
421 79 0.02
422 4 0.00
423 3 0.00
424 259 0.08
425 339 0.10
426 77 0.02
427 84 0.02
428 294 0.09
429 1092 0.32
430 518 0.15
431 376 0.11
432 27 0.01
433 78 0.02
434 152 0.04
435 5 0.00
436 9 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (430 bp):
AAGTTATAAAAGAACTCGTAAAGTTTGACAAGTTCATAAGTTCGTCCAAGAACCAAGAGAGAAAC
AATTCTCACGTAAATAAGTTTTTAATTCAAAGACAGAAAGTTGTTTACAAAATGACAAACTATTT
AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAGTC
TTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGTAAGTTCG
TCCTAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
TTACAAAATGATAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAAATT
GGTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCG
Found at i:53216 original size:50 final size:50
Alignment explanation
Indices: 53130--53260 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
53120 TGCATGACTT
* *
53130 GATTTAATGATGAAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACATAATGCATG-TGAG
* * * *
53182 GATTTATGATGCATATTTAACTAACATGTAAGTTACTTAATGCATGTGAT
1 GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTGAG
* *
53232 TATTTATGATGCAAACTTAACTAATCATG
1 GATTTATGATGCAAATTTAACTAA-CATG
53261 AGAGTTAATG
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
49 1 0.01
50 50 0.74
51 12 0.18
52 5 0.07
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTGAG
Found at i:53493 original size:17 final size:17
Alignment explanation
Indices: 53462--53494 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
53452 CAAACACTTA
53462 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
53479 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
53495 AATCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:54038 original size:216 final size:215
Alignment explanation
Indices: 53656--54345 Score: 793
Period size: 216 Copynumber: 3.2 Consensus size: 215
53646 TAAGGAGATT
* * * * *
53656 AAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGAAAGTTCAGCCAAAAACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAATACCAAGAGAGAAA
* * *
53721 C-ATTTCTCACATAAATAAGTTTTTAATTCAAAGAGCAACAGTTGTTTACAAAATGACAAACTAT
66 CAATTT-TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * *
53785 TTAGACCTAATAATGTGATTTCCCAAGTATAGAATGTTCGAAAAATTGGTTGAAGG-ATAGTATC
130 TTAGA-CTAATGATGCGATTTCCCAAGTATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GCATC
* *
53849 GACTTGATTACTTTAAGGAACCG
193 GACTTGAATACTTCAAGGAACCG
* *
53872 AAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTTATCCAAATACCAAGAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAATACCAAGAGAGAAA
* * * *
53937 CAATTTTTACGTAGATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAACTATT
66 CAATTTTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * *
54002 TAGAATGAATGATGCAATTTCTCAAGCT-TGGAATGTTCGAAAAATTAGTCGATGGAATGCATCG
131 TAGACT-AATGATGCGATTTCCCAAG-TATGGAATGTTCGAAAAATTGGTCGAAGGAATGCATCG
* * * *
54066 TA-TTTAATGCTCTCAA-AAATCG
194 -ACTTGAATACT-TCAAGGAACCG
* * * * *
54088 AAGTTATATATGAACTCGTAAATGTTTGACAAGTTTGGAAGTTCGTCCAAGA-ACCAAGAGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAA-ATACCAAGAGAGAA
* * * *
54152 ATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-TATGCAAAATGACAAACTAT
65 ACAATTTTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * *
54216 TTAGACCAAATGATGCGATTTCCCGAGTATGGAATGTTCGAAAAA-TGGCTCAAAGGAATGGATA
130 TTAGA-CTAATGATGCGATTTCCCAAGTATGGAATGTTCGAAAAATTGG-TCGAAGGAATGCATC
* *
54280 GTCTTGAATACTTCAAGGAACCA
193 GACTTGAATACTTCAAGGAACCG
* * *
54303 AAGTAATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTT
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
54346 TGACCAAATG
Statistics
Matches: 394, Mismatches: 68, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
214 7 0.02
215 112 0.28
216 263 0.67
217 12 0.03
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (215 bp):
AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAATACCAAGAGAGAAA
CAATTTTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
TAGACTAATGATGCGATTTCCCAAGTATGGAATGTTCGAAAAATTGGTCGAAGGAATGCATCGAC
TTGAATACTTCAAGGAACCG
Found at i:54472 original size:127 final size:127
Alignment explanation
Indices: 54244--54472 Score: 277
Period size: 127 Copynumber: 1.8 Consensus size: 127
54234 TTTCCCGAGT
*
54244 ATGGAATGTTCGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTCAAGGAACCAAAGTAA
1 ATGGAAAGTTCGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTCAAGGAACCAAAGTAA
* * * *
54309 TAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTTGACCAAATGATTAGATTCTAGAGC
66 CAAAAGAACTCGTAAAAGTTTGACAAGTACGGAAGTTTGACCAAATGATTAGATTCTAGAGC
* * * * *
54371 ATGGAAAGTTCGGAAAATTGG-TCGAAGGAATGGATCGTCTTGAATAC-TCTTAGGAA-TAGAAG
1 ATGGAAAGTTC-GAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTC-AAGGAACCA-AAG
* * *
54433 TTACAAAAGAACTCTTAAATGTTCTG-CAAGTACGGAAGTT
63 TAACAAAAGAACTCGTAAAAGTT-TGACAAGTACGGAAGTT
54473 CGTCCAAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
126 3 0.04
127 72 0.85
128 10 0.12
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (127 bp):
ATGGAAAGTTCGAAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTCAAGGAACCAAAGTAA
CAAAAGAACTCGTAAAAGTTTGACAAGTACGGAAGTTTGACCAAATGATTAGATTCTAGAGC
Found at i:54776 original size:215 final size:213
Alignment explanation
Indices: 54362--55895 Score: 1395
Period size: 215 Copynumber: 7.2 Consensus size: 213
54352 AATGATTAGA
* * * * *
54362 TTCTAGAGCATGGAAAGTTCGGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTT-AGGA
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACT-TTAAGGA
** * * * * *
54426 ATAGAAGTTACAAAAGAACTCTTAAATGTTCTG-CAAG-TACGGAAGTTCGTCCAAAAACCATGA
65 ACCGAAGTTATAAAAGAACT-GTAAAAGTT-TGACAAGTTA--GAAGTTCGTCCAAGAACCAAGA
* * *
54489 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAA
126 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
*
54554 CCTATTTAGACCAAATGATGTCAT
191 ACTATTTAGACCAAATGATG-CAT
* * * * * *
54578 TTCTCGAGCATGGAATGCTT-GAAAAATTGCACAAAGGAATGGGTCA-CTTTTAGTAGTTTAAGG
1 TTCTCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCATC-TTGAATACTTTAAGG
*
54641 AACCGAAGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGA
64 AACCGAAGTTATAAAAGAACTG-T-AAAAGTTTGACAAG-TTAGAAGTTCGTCCAAGAACCAAGA
* * * * * * *
54706 GAGAAACATTTGTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTAAAAAATTAAAA
126 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
54769 ACTATTTAGACCAAATGATGCGAT
191 ACTATTTAGACCAAATGATGC-AT
* * * *
54793 TTCTCGAACATGGAATGTTCGAAAAATCT-CTTGAAGGATTGGATCGTCTTGAATACTTTAAGGA
1 TTCTCGAGCATGGAATGTTCGAAAAAT-TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGA
** * ***
54857 ATTGAAGTTAT-AAAGAAGCT-TGAGAAG-TT--C--G---GAAGTTCAAACAAGAACCAAGAGA
65 ACCGAAGTTATAAAAGAA-CTGT-AAAAGTTTGACAAGTTAGAAGTTCGTCCAAGAACCAAGAGA
* *
54912 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATGACAAAC
128 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
** * *
54977 TATTTAGAAAAAATAATGTGAT
193 TATTTAGACCAAATGATG-CAT
* * * ** *
54999 TTCTCGAGTATGGAATGTTCGAAAAATTGGTTGAAGG-ATAGGATCGGCTTGAATACTTTAAGGC
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT-GGATCATCTTGAATACTTTAAGGA
** * * * * *
55063 ATTGAAGTTATAAAAAAAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGTG
65 ACCGAAGTTAT-AAAAGAACT-GTAAAAGTTTGACAAGTTAG-AAGTTCGTCCAAGAACCAAGAG
* *
55128 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAATTAAAAA
127 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
* ***
55193 CTGTTTAGAATGAATGATGCTAT
192 CTATTTAGACCAAATGATGC-AT
* * * * * * * * *
55216 TTCCCGAGCATGGAAT-TTCAAAAAATTGGTCGATGGAATGTATCATCCTT-AATGCATTCAGAA
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCAT-CTTGAATACTTTAAGGA
** * * * *
55279 ATTGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTAAAAGTTAGTCCAAGAATCAAGAGAG
65 ACCGAAGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTAGAAGTTCGTCCAAGAACCAAGAGAG
* * * *
55344 AAACAATTCTCACGTAAATAAGTTTTTAATTCCAAGACCAGAAGTAGTTTACAAAATGAAAAAAT
129 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACT
*
55409 ATTTAGACCAAATTATGCGAT
194 ATTTAGACCAAATGATGC-AT
* * * * *
55430 TT-TCGGAGCATAGAATATTCGAACAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGA
1 TTCTC-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGA
* * *
55494 ACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACTAAGAGA
65 ACCGAAGTTATAAAAGAACT-GTAAAAGTTTGACAAG-TTAGAAGTTCGTCCAAGAACCAAGAGA
* * * * *
55559 GAAACAATTCTCATGTAAAT-A-TTTTTAATTCAACGGCAAAAAGTTGATTACAAAATGAAAAAC
128 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
* * * *
55622 AATTTAGAACAAATGTTGAGAT
193 TATTTAGACCAAATGATG-CAT
* * * * *
55644 TTCCCAAGCATGGAATGTTCAAAAAATTACTC----GAATGGATCATCTTGAATACTTAAAGGAA
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
* * * * * * *
55705 CCAAAGTTATAAGAGAACTCATAAAAGTTTGACTAGTTTGTATGTTCGTCCTAGAACCAAGAGAG
66 CCGAAGTTATAAAAGAACT-GTAAAAGTTTGACAAGTTAG-AAGTTCGTCCAAGAACCAAGAGAG
* * * * * * * *
55770 AGAA-AATTCTCACATAAATAAGTTTTTAATTCGAATAGCAAAAGTTATTCACAAAATGACAAAG
129 A-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
*
55834 TTTTTAGACCGAATAAT-ATG-A-
193 TATTTAGACC--A-AATGATGCAT
* * * *
55855 TTCTCGAGCATGGAAAGTTTGAAAAATTGGTTGAAGGAATG
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
55896 TGATATGAGT
Statistics
Matches: 1075, Mismatches: 192, Indels: 103
0.78 0.14 0.08
Matches are distributed among these distances:
204 38 0.04
205 3 0.00
206 118 0.11
207 2 0.00
208 10 0.01
209 6 0.01
210 97 0.09
211 28 0.03
212 41 0.04
213 7 0.01
214 191 0.18
215 216 0.20
216 150 0.14
217 166 0.15
219 2 0.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (213 bp):
TTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
CCGAAGTTATAAAAGAACTGTAAAAGTTTGACAAGTTAGAAGTTCGTCCAAGAACCAAGAGAGAA
ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTAT
TTAGACCAAATGATGCAT
Found at i:55014 original size:206 final size:208
Alignment explanation
Indices: 54362--55895 Score: 1019
Period size: 214 Copynumber: 7.2 Consensus size: 208
54352 AATGATTAGA
* * * * *
54362 TTCTAGAGCATGGAAAGTTCGGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTT-AGGA
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACT-TTAAGGA
* * * * *** * *
54426 ATAGAAGTTACAAAAGAACTCTTAAATGTTCTG-CAAGTACGGAAGTTCGTCCAAAAACCATGAG
65 ATTGAAGTTATAAAAG-------AAA-GCT-TGACAAGTTCGGAAGTTCAAACAAGAACCAAGAG
* * * *
54490 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAAC
121 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
*
54555 CTATTTAGACCAAATGATGTC-AT
186 CTATTTAGAACAAATGATG-CGAT
*** * * * * *
54578 TTCTCGAGCATGGAATGCTT-GAAAAATTGCACAAAGGAATGGGTC-ACTTTTAGTAGTTTAAGG
1 TTCTCGAGCATGGAATG-TTCGAAAAATTGCTTGAAGGAATGGATCGTC-TTGAATACTTTAAGG
** * ** ***
54641 AACCGAAGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGA
64 AATTGAAGTTAT-AA--AA--G----AAAGCTTGACAAGTTCGGAAGTTCAAACAAGAACCAAGA
* * * * * * *
54706 GAGAAACATTTGTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTAAAAAATTAAAA
120 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAA
*
54769 ACTATTTAGACCAAATGATGCGAT
185 ACTATTTAGAACAAATGATGCGAT
* *
54793 TTCTCGAACATGGAATGTTCGAAAAATCT-CTTGAAGGATTGGATCGTCTTGAATACTTTAAGGA
1 TTCTCGAGCATGGAATGTTCGAAAAAT-TGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*
54857 ATTGAAGTTAT-AAAG-AAGCTTGAGAAGTTCGGAAGTTCAAACAAGAACCAAGAGAGAAACAAT
65 ATTGAAGTTATAAAAGAAAGCTTGACAAGTTCGGAAGTTCAAACAAGAACCAAGAGAGAAACAAT
* *
54920 TCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
130 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGA
* * *
54985 AAAAATAATGTGAT
195 ACAAATGATGCGAT
* * * *
54999 TTCTCGAGTATGGAATGTTCGAAAAATTGGTTGAAGG-ATAGGATCGGCTTGAATACTTTAAGGC
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAAT-GGATCGTCTTGAATACTTTAAGGA
* * ** * *
55063 ATTGAAGTTATAAAAAAAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGTG
65 ATTGAAGTTAT----AAAA---G--AAAGCTTGACAAGTTCGGAAGTTCAAACAAGAACCAAGAG
* *
55128 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAATACCAAAAGTTGTTTACAAAATTAAAAA
121 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
* ** *
55193 CTGTTTAGAATGAATGATGCTAT
186 CTATTTAGAACAAATGATGCGAT
* * * * * * * * * * *
55216 TTCCCGAGCATGGAAT-TTCAAAAAATTGGTCGATGGAATGTATCATCCTT-AATGCATTCAGAA
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGT-CTTGAATACTTTAAGGA
* ** ** *
55279 ATTGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTT-AAAAGTT-AGTCCAAGAATCAAGAG
65 ATTGAAGTTAT--AA-AA---G-AAA-GCTTGACAAGTTCGGAAGTTCA-AACAAGAACCAAGAG
* * *
55342 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCCAAGACCAGAAGTAGTTTACAAAATGAAAAA
121 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAA
* * *
55407 ATATTTAGACCAAATTATGCGAT
186 CTATTTAGAACAAATGATGCGAT
* * *
55430 TT-TCGGAGCATAGAATATTCGAACAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGA
1 TTCTC-GAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*** * ** *** *
55494 ACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACTAAGAGA
65 ATTGAAGTTATAAAAG--------AAAGCTTGACAAGTTCGGAAGTTCAAACAAGAACCAAGAGA
* * * * *
55559 GAAACAATTCTCATGTAAAT-A-TTTTTAATTCAACGGCAAAAAGTTGATTACAAAATGAAAAAC
122 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
* * *
55622 AATTTAGAACAAATGTTGAGAT
187 TATTTAGAACAAATGATGCGAT
* * * * * * *
55644 TTCCCAAGCATGGAATGTTCAAAAAATTAC-T---CGAATGGATCATCTTGAATACTTAAAGGAA
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
*** * * * * * * *** *
55705 CCAAAGTTATAAGAGAACTCATAAAAGTTTGACTAGTTTGTATGTTCGTCCTAGAACCAAGAGAG
66 TTGAAGTTAT---A-AA---A-GAAAGCTTGACAAGTTCGGAAGTTCAAACAAGAACCAAGAGAG
* * * * * * * *
55770 AGAA-AATTCTCACATAAATAAGTTTTTAATTCGAATAGCAAAAGTTATTCACAAAATGACAAAG
123 A-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAAC
* * * * **
55834 TTTTTAGACCGAATAATATGA-
187 TATTTAGAACAAATGATGCGAT
* * *
55855 TTCTCGAGCATGGAAAGTTTGAAAAATTGGTTGAAGGAATG
1 TTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATG
55896 TGATATGAGT
Statistics
Matches: 1058, Mismatches: 199, Indels: 123
0.77 0.14 0.09
Matches are distributed among these distances:
204 50 0.05
205 3 0.00
206 119 0.11
209 2 0.00
210 87 0.08
211 31 0.03
212 47 0.04
213 7 0.01
214 194 0.18
215 191 0.18
216 140 0.13
217 181 0.17
218 3 0.00
219 2 0.00
221 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (208 bp):
TTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
TTGAAGTTATAAAAGAAAGCTTGACAAGTTCGGAAGTTCAAACAAGAACCAAGAGAGAAACAATT
CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGAA
CAAATGATGCGAT
Found at i:57966 original size:216 final size:216
Alignment explanation
Indices: 57427--58790 Score: 1232
Period size: 216 Copynumber: 6.3 Consensus size: 216
57417 TTTTATATCA
* * * ** * * ***
57427 GAATGGATCGTCTTGAATGCTCTCAGGAACTTAAGTTACAAAAGAACT-ATTAAATGTTCCTCAA
1 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCA-TAAAAGTTTGACAA
* * * * * * * * * *
57491 GTACGGAAGTTCATCCAAAAACCATGAAAGAAACAATTATCACGTAAATAAGTTTTTAATTGAAA
65 GTTCGAAAGTTTAGCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAA
* * * * * *
57556 GATC-AAAATTTGTTTAGAAAATGATAAACTATTTAGACCAAATGATGCAATTTCCCAAGCATGA
130 GA-CGAAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGG
* *
57620 AATGCTT-AAAAAATTG--CAAAG
194 AATG-TTCGAAAAATTGCTCGAAG
* * * * *
57641 GAATGTG-TCGCCTTTAATAGTTTAAGGAACCAAAGTTAT-AAAGAACTAATAAAAGTTTGACAA
1 GAATG-GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAA
* * *
57704 GTT-TAGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTCA
65 GTTCGA-AAGTTTAG-CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCA
* *
57765 AAGACGAAAAGTTGATTACAAAATGAGAAAAACTATTTAGACCAAATGATGCGATTTCTCGAGCA
128 AAGACGAAAAGTTGATTACAAAAT--GAAAAACTATTTAGACCAAATGATGCAATTTCCCGAGCA
* *
57830 TGGAATGTTCGGAAAATTGCTTGAAG
191 TGGAATGTTCGAAAAATTGCTCGAAG
* * * * * *
57856 GAATGAATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAATAACTCATAAAAGCTTCACAAG
1 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
* *
57921 TTCGAAAGTTTAGCCAAGAACTAAGAGAGACACAATTCTCATGTAAATAAGTTTTTAATTCAAAG
66 TTCGAAAGTTTAGCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAG
* * * * * * * *
57986 A-GCAAAAGTTGTTTACAAAATGACACACTATTTTGACCAAATAATGTAATTTTCTGAGCATGGA
131 ACG-AAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGA
*
58050 ATGTTCGAAAAATTGGTCGAAG
195 ATGTTCGAAAAATTGCTCGAAG
* * *
58072 G-ATAGGATCGGCTTGAATA----AA--AACTCGTAAAAGTTATAAAAGAACTCGTAAAAGTTCG
1 GAAT-GGATCGTCTTGAATACTTTAAGGAAC-CG---AAGTTATAAAAGAACTCATAAAAGTTTG
* * * * * *
58130 ACAAGTTTGGATGTTCATCCAAAAACCAAGAGAGAAACAATTCTC-TCGTAAATAAGTTTTTAAT
61 ACAAGTTCGAAAGTTTAGCCAAGAACCAAGAGAGAAACAATTCTCAT-GTAAATAAGTTTTTAAT
* * * *** * *
58194 TCAAAGTC-AAAAGTTGTTTACAAAATTAAAAACCTATTTAGAATGAATGATGCGATTTCACGAG
125 TCAAAGACGAAAAGTTGATTACAAAATGAAAAA-CTATTTAGACCAAATGATGCAATTTCCCGAG
* * *
58258 CATGGAATGTTCGGAAAATTGGTCGAAT
189 CATGGAATGTTCGAAAAATTGCTCGAAG
* * * * * * * * * *
58286 GAATGGATCTTCTTTAATGCTCTCAGAAACCAAAGTTATAAAAGAACTCGTAAATGTTTAACAAG
1 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
* * * * * * *
58351 TTCTAAAGTTCATCCAAGATCTAAGAGAAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
66 TTCGAAAGTTTAGCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAG
* * *
58416 ACCAAAAGTT-ATTTAGAAAATGATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGA
131 ACGAAAAGTTGA-TTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGA
* *
58480 ATGCTT-GAAAAATTGCACAAAG
195 ATG-TTCGAAAAATTGCTCGAAG
** * * ** *
58502 GAATGGATCACCTTTAATAGTTTAAGGAACCGGTGTTATAAAAGAACTCATAAAAGTTTGATAAG
1 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
* * * * * * *
58567 TTTGGAAG-TTCGTCCAAGAACAAAGAGAGAAACAATTGTTATGTAAAT-A-TTTTTAATACAAA
66 TTCGAAAGTTTAG-CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAA
* * * * * *
58629 GACGAAAAGTTTATTACAAAATGAAAAACTACTTAGACCAAATTATGCGATTTCCCAAGCACGGA
130 GACGAAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGA
* * * *
58694 ATGGTAGGAAAATTGCTCGCAG
195 ATGTTCGAAAAATTGCTCGAAG
* * * *
58716 GAATGGATCGTCTTGAATAATTTAAGGAACTGAAGTTAGAAAAGAACTCATAAAAGCTTGACAAG
1 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
58781 TTCGAAAGTT
66 TTCGAAAGTT
58791 CAGCAAGTCT
Statistics
Matches: 926, Mismatches: 184, Indels: 79
0.78 0.15 0.07
Matches are distributed among these distances:
210 4 0.00
211 30 0.03
212 6 0.01
213 124 0.13
214 314 0.34
215 43 0.05
216 341 0.37
217 27 0.03
218 33 0.04
219 1 0.00
220 3 0.00
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (216 bp):
GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
TTCGAAAGTTTAGCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAG
ACGAAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAA
TGTTCGAAAAATTGCTCGAAG
Found at i:58260 original size:430 final size:428
Alignment explanation
Indices: 57427--58794 Score: 1480
Period size: 430 Copynumber: 3.2 Consensus size: 428
57417 TTTTATATCA
* * * * * * * **
57427 GAATGGATCGTCTTGAATGCTCTCAGGAACTTAAGTTACAAAAGAACT-ATTAAATG-TTCCTCA
1 GAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCA-TAAAAGCTT-AACA
* * * * * * * *
57490 AGTACGGAAGTTCATCCAAAAACCATGA-AAGAAACAATTATCACGTAAATAAGTTTTTAATTGA
64 AGTTCGAAAGTTCAGCCAAGAACTAAGAGAA-AAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * * * *
57554 AAGATCAAAATTTGTTTAGAAAATGATAAACTATTTAGACCAAATGATGCAATTTCCCAAGCATG
128 AAGACCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCCGAGCATG
* * * *
57619 AAATGCTTAAAAAATTG--CAAAGGAATGTG-TCGCCTTTAATAGTTTAAGGAACC---AAAGTT
193 GAATGCTTGAAAAATTGCACAAAGGAATG-GATCACCTTGAATA---TAA-GAACCGGTAAAGTT
* *
57678 AT-AAAGAACTAATAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
253 ATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
*
57742 GTCATGTAAATATTTTTAATTCAAAGACGAAAAGTTGATTACAAAATGAGAAAAACTATTTAGAC
318 GTC-TGTAAATATTTTTAATTCAAAGACGAAAAGTTGTTTACAAAAT--GAAAAACTATTTAGAC
* *
57807 CAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTTGAAG
380 CAAATGATGCGATTTCACGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * *
57856 GAATGAATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAATAACTCATAAAAGCTTCACAAG
1 GAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTAACAAG
* * * *
57921 TTCGAAAGTTTAGCCAAGAACTAAGAGAGACACAATTCTCATGTAAATAAGTTTTTAATTCAAAG
66 TTCGAAAGTTCAGCCAAGAACTAAGAGAAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * * *
57986 AGCAAAAGTTGTTTACAAAATGACACACTATTTTGACCAAATAATGTAATTTTCTGAGCATGGAA
131 ACCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCCGAGCATGGAA
** * **
58051 TG-TTCGAAAAATTGGTCGAAGG-ATAGGATCGGCTTGAATA-AA-AACTC-GTAAAAGTTATAA
196 TGCTT-GAAAAATTGCACAAAGGAAT-GGATCACCTTGAATATAAGAAC-CGGT-AAAGTTATAA
* * * * * *
58111 AAGAACTCGTAAAAGTTCGACAAGTTTGGATGTTCATCCAAAAACCAAGAGAGAAACAATTCTCT
257 AAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCT
* * ***
58176 CGTAAATAAGTTTTTAATTCAAAGTC-AAAAGTTGTTTACAAAATTAAAAACCTATTTAGAATGA
322 -GTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGTTTACAAAATGAAAAA-CTATTTAGACCAA
* *
58240 ATGATGCGATTTCACGAGCATGGAATGTTCGGAAAATTGGTCGAAT
383 ATGATGCGATTTCACGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * * ** * * *
58286 GAATGGATCTTCTTTAATGCTCTCAGAAACCAAAGTTATAAAAGAACTCGTAAATGTTTAACAAG
1 GAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTAACAAG
* * *
58351 TTCTAAAGTTCATCCAAGATCTAAGAGAAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
66 TTCGAAAGTTCAGCCAAGAACTAAGAGAAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * *
58416 ACCAAAAGTTATTTAGAAAATGATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAA
131 ACCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCCGAGCATGGAA
*
58481 TGCTTGAAAAATTGCACAAAGGAATGGATCACCTTTAATAGTTTAAGGAACCGGT---GTTATAA
196 TGCTTGAAAAATTGCACAAAGGAATGGATCACCTTGAATA---TAA-GAACCGGTAAAGTTATAA
* * *
58543 AAGAACTCATAAAAGTTTGATAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTGTTA
257 AAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTG-TC
* *
58608 TGTAAATATTTTTAATACAAAGACGAAAAGTT-TATTACAAAATGAAAAACTACTTAGACCAAAT
321 TGTAAATATTTTTAATTCAAAGACGAAAAGTTGT-TTACAAAATGAAAAACTATTTAGACCAAAT
* * * * * * *
58672 TATGCGATTTCCCAAGCACGGAATGGTAGGAAAATTGCTCGCAG
385 GATGCGATTTCACGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * *
58716 GAATGGATCGTCTTGAATAATTTAAGGAACTGAAGTTAGAAAAGAACTCATAAAAGCTTGACAAG
1 GAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTAACAAG
58781 TTCGAAAGTTCAGC
66 TTCGAAAGTTCAGC
58795 AAGTCTTTAG
Statistics
Matches: 776, Mismatches: 134, Indels: 57
0.80 0.14 0.06
Matches are distributed among these distances:
425 3 0.00
426 1 0.00
427 2 0.00
428 2 0.00
429 178 0.23
430 438 0.56
431 60 0.08
432 82 0.11
433 2 0.00
434 2 0.00
435 1 0.00
436 5 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (428 bp):
GAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTAACAAG
TTCGAAAGTTCAGCCAAGAACTAAGAGAAAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
ACCAAAAGTTATTTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCCCGAGCATGGAA
TGCTTGAAAAATTGCACAAAGGAATGGATCACCTTGAATATAAGAACCGGTAAAGTTATAAAAGA
ACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCTGTAA
ATATTTTTAATTCAAAGACGAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
ATTTCACGAGCATGGAATGTTCGGAAAATTGCTCGAAG
Found at i:59189 original size:216 final size:216
Alignment explanation
Indices: 58815--59360 Score: 747
Period size: 216 Copynumber: 2.5 Consensus size: 216
58805 ACCAAATGTA
* * * *
58815 CGATTTCCCAAGCATGGAATGCTCGAAAAATTAGTCGAAGGAATGGGTCATCTTCAATGCTCTCA
1 CGATTTCCCGAGCATGGAATGCTTGAAAAATTAGTCGAAGGAATGGGTCATCTTTAATGCTTTCA
* * *
58880 GAAACCGAAGTTATAAAAGAACTGGAAAATATTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAG
66 GAAACCGAAGTTATAAAAGAACTGGTAAATATTTGACAAGTTTTGAAGGTCGTCCAAGAACCAAG
** * * *
58945 AGAGAAACAATCCTTGTCTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGTTTAGAAAATTAT
131 AGAGAAACAATCCTCATCTAAATAAGTTTTTAATTCAAAGACCAAAAGGTT-TTTACAAAATGAC
**
59009 AAACTATGTAGAATGAAGGATG
195 AAACTATGTAGAACAAAGGATG
* *
59031 CGATTTCCCGAGCATGGAATGTTTGGAAAATTAGTCGAAGGAATGGGTCATCTTTAATGCTTTCA
1 CGATTTCCCGAGCATGGAATGCTTGAAAAATTAGTCGAAGGAATGGGTCATCTTTAATGCTTTCA
*
59096 GAAACCGAAGTTATAAAAGAACTGGTAAATATTTGACAAGTTTTGAAGGTCGTCCAAGAACCTAG
66 GAAACCGAAGTTATAAAAGAACTGGTAAATATTTGACAAGTTTTGAAGGTCGTCCAAGAACCAAG
*
59161 AGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGGTTTTTACAAAATGACA
131 AGAGAAACAATCCTCATCTAAATAAGTTTTTAATTCAAAGACCAAAAGGTTTTTACAAAATGACA
* * *
59226 AACTATTTAGACCAAATGATG
196 AACTATGTAGAACAAAGGATG
* * * * *
59247 CGATTTCCCGAGCATGGAATGCTTGAAAAATT-GCACAAAGGAATGGATCACCTTTAGTAG-TTT
1 CGATTTCCCGAGCATGGAATGCTTGAAAAATTAG-TCGAAGGAATGGGTCATCTTTAAT-GCTTT
* * * * * *
59310 AAGGAACCGAAGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTTAGAAG
64 CAGAAACCGAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTTTGAAG
59361 TTC
Statistics
Matches: 292, Mismatches: 34, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
215 1 0.00
216 271 0.93
217 20 0.07
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (216 bp):
CGATTTCCCGAGCATGGAATGCTTGAAAAATTAGTCGAAGGAATGGGTCATCTTTAATGCTTTCA
GAAACCGAAGTTATAAAAGAACTGGTAAATATTTGACAAGTTTTGAAGGTCGTCCAAGAACCAAG
AGAGAAACAATCCTCATCTAAATAAGTTTTTAATTCAAAGACCAAAAGGTTTTTACAAAATGACA
AACTATGTAGAACAAAGGATG
Done.