Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006603.1 Kokia drynarioides strain JFW-HI SEQ_121192, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3424
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28


Found at i:1907 original size:21 final size:20

Alignment explanation


    Indices: 1883--1925  Score: 50
    Period size: 21  Copynumber: 2.1  Consensus size: 20

       1873 ACCCTGTGAC

                     *           
       1883 CTTGGAAGCTCCTGAGAATCT
          1 CTTGGAAGCCCCTGAGAA-CT

                *         *     
       1904 CTTGTAAGCCCCTGTGAACT
          1 CTTGGAAGCCCCTGAGAACT

              
       1924 CT
          1 CT

       1926 GATCAGAACC


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  20    4  0.21
  21   15  0.79

ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30


Consensus pattern (20 bp):   
CTTGGAAGCCCCTGAGAACT

Found at i:3094 original size:15 final size:15

Alignment explanation


    Indices: 3074--3102  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       3064 TGAGCAAACT

                           
       3074 TTGCACCAGTAGACC
          1 TTGCACCAGTAGACC

                          
       3089 TTGCACCAGTAGAC
          1 TTGCACCAGTAGAC

       3103 AAGTCAGACA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21


Consensus pattern (15 bp):   
TTGCACCAGTAGACC
Done.