Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006604.1 Kokia drynarioides strain JFW-HI SEQ_121193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35


Found at i:1006 original size:17 final size:17

Alignment explanation


    Indices: 962--1007  Score: 58
    Period size: 17  Copynumber: 2.7  Consensus size: 17

        952 AAATCTTTAT

                            *
        962 TTTAAATTTATTCTAAG
          1 TTTAAATTTATTCTAAA

                         *    
        979 TTTAGAA-TTATTTTAAA
          1 TTTA-AATTTATTCTAAA

                        
        996 TTTAAATTTATT
          1 TTTAAATTTATT


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  16    2  0.08
  17   21  0.84
  18    2  0.08

ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57


Consensus pattern (17 bp):   
TTTAAATTTATTCTAAA
Done.