Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006616.1 Kokia drynarioides strain JFW-HI SEQ_121206, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6083
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:5118 original size:26 final size:26

Alignment explanation


    Indices: 5089--5139  Score: 66
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       5079 TTTCAAAAAT

                               *      
       5089 TTTAGCTCAAACGAGCCCAGACAGAG
          1 TTTAGCTCAAACGAGCCCAAACAGAG

                   ***               
       5115 TTTAGCTTTTACGAGCCCAAACAGA
          1 TTTAGCTCAAACGAGCCCAAACAGA

       5140 ATATCACTTT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  26   21  1.00

ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22


Consensus pattern (26 bp):   
TTTAGCTCAAACGAGCCCAAACAGAG

Found at i:5172 original size:25 final size:25

Alignment explanation


    Indices: 5137--5233  Score: 122
    Period size: 25  Copynumber: 3.9  Consensus size: 25

       5127 GAGCCCAAAC

                                     
       5137 AGAATATCACTTTTATGAGCCAGAT
          1 AGAATATCACTTTTATGAGCCAGAT

                  *    *   *   *    *
       5162 AGAATACCACTCTTACGAGTCAGAC
          1 AGAATATCACTTTTATGAGCCAGAT

                    *                
       5187 AGAATATCGCTTTTATGAGCCAGAT
          1 AGAATATCACTTTTATGAGCCAGAT

                       * *        
       5212 AGAATATCACTATAATGAGCCA
          1 AGAATATCACTTTTATGAGCCA

       5234 AACAAGATAT


Statistics
Matches: 58,  Mismatches: 14, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  25   58  1.00

ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27


Consensus pattern (25 bp):   
AGAATATCACTTTTATGAGCCAGAT
Done.