Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006625.1 Kokia drynarioides strain JFW-HI SEQ_121215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 813

Length: 1355
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.40


Found at i:380 original size:23 final size:23

Alignment explanation


    Indices: 348--391  Score: 70
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        338 ACTACAATTT

                                   
        348 TCTAAATAAAATAATAATAAATA
          1 TCTAAATAAAATAATAATAAATA

                 *       *       
        371 TCTAAGTAAAATATTAATAAA
          1 TCTAAATAAAATAATAATAAA

        392 ATAATATTTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32


Consensus pattern (23 bp):   
TCTAAATAAAATAATAATAAATA

Found at i:384 original size:13 final size:11

Alignment explanation


    Indices: 352--394  Score: 52
    Period size: 11  Copynumber: 3.8  Consensus size: 11

        342 CAATTTTCTA

                     * 
        352 AATAAAATAAT
          1 AATAAAATATT

                        
        363 AAT-AAATATCT
          1 AATAAAATAT-T

                        
        374 AAGTAAAATATT
          1 AA-TAAAATATT

                     
        386 AATAAAATA
          1 AATAAAATA

        395 ATATTTAACT


Statistics
Matches: 28,  Mismatches: 1, Indels: 6
        0.80            0.03        0.17

Matches are distributed among these distances:
  10    5  0.18
  11   13  0.46
  12    4  0.14
  13    6  0.21

ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30


Consensus pattern (11 bp):   
AATAAAATATT
Done.