Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006626.1 Kokia drynarioides strain JFW-HI SEQ_121216, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41


Found at i:905 original size:13 final size:13

Alignment explanation


    Indices: 883--915  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        873 CGTCGTATTT

                         
        883 TAAT-AATAAAAG
          1 TAATAAATAAAAG

                         
        895 TAATAAATAAAAG
          1 TAATAAATAAAAG

              *     
        908 TAGTAAAT
          1 TAATAAAT

        916 TTTAAAAAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  12    4  0.21
  13   15  0.79

ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27


Consensus pattern (13 bp):   
TAATAAATAAAAG

Found at i:1342 original size:20 final size:19

Alignment explanation


    Indices: 1310--1353  Score: 54
    Period size: 20  Copynumber: 2.3  Consensus size: 19

       1300 CATTGAAAAA

                                
       1310 ATAAAAATAAAAAA-AGTAT
          1 ATAAAAATAAAAAATA-TAT

                     *          
       1329 ATAAAAACTTAAAAATATAT
          1 ATAAAAA-TAAAAAATATAT

                 
       1349 ATAAA
          1 ATAAA

       1354 TTTAGAAACA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  19    7  0.32
  20   14  0.64
  21    1  0.05

ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25


Consensus pattern (19 bp):   
ATAAAAATAAAAAATATAT
Done.