Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006636.1 Kokia drynarioides strain JFW-HI SEQ_121226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1667
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32


Found at i:123 original size:19 final size:21

Alignment explanation


    Indices: 89--127  Score: 64
    Period size: 19  Copynumber: 2.0  Consensus size: 21

         79 TTTTATATAT

                                 
         89 ATATTTATATAAATAAAAAAC
          1 ATATTTATATAAATAAAAAAC

                                
        110 ATATTTA-A-AAATAAAAAA
          1 ATATTTATATAAATAAAAAA

        128 AAATAAGAGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19   10  0.56
  20    1  0.06
  21    7  0.39

ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31


Consensus pattern (21 bp):   
ATATTTATATAAATAAAAAAC
Done.