Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006639.1 Kokia drynarioides strain JFW-HI SEQ_121229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5160
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30


Found at i:38 original size:12 final size:12

Alignment explanation


    Indices: 21--46  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         11 GCTGAAGGAA

                        
         21 AAGGAAGAAGAG
          1 AAGGAAGAAGAG

                        
         33 AAGGAAGAAGAG
          1 AAGGAAGAAGAG

              
         45 AA
          1 AA

         47 TAAAGAGAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00


Consensus pattern (12 bp):   
AAGGAAGAAGAG

Found at i:1128 original size:13 final size:14

Alignment explanation


    Indices: 1106--1140  Score: 54
    Period size: 13  Copynumber: 2.6  Consensus size: 14

       1096 TTAGTCACTT

                          
       1106 GAAAAAAAAAAG-A
          1 GAAAAAAAAAAGAA

                 *        
       1119 GAAAAGAAAAAGAA
          1 GAAAAAAAAAAGAA

                    
       1133 GAAAAAAA
          1 GAAAAAAA

       1141 TATATTTGCT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  13   11  0.58
  14    8  0.42

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (14 bp):   
GAAAAAAAAAAGAA

Done.