genome.fa.s6640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006640.1 Kokia drynarioides strain JFW-HI SEQ_121230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  368772

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5114--5161	23	2.1	23	100	0	96	43	8	31	16	1.78
7369--7486	20	5.9	20	83	0	101	15	32	16	35	1.90
7364--7483	40	3.0	40	77	2	125	15	30	17	36	1.90
24574--24625	26	2.0	26	96	0	95	48	21	3	26	1.67
26083--26133	26	1.9	27	84	11	70	17	21	3	56	1.57
34448--34494	24	2.0	24	84	16	62	70	6	8	14	1.32
40154--40187	18	1.9	17	88	5	50	55	8	11	23	1.63
43255--43335	37	2.2	37	100	0	162	33	11	18	37	1.86
51095--51160	32	2.1	32	100	0	132	31	12	13	42	1.81
51760--51860	49	2.1	49	100	0	202	48	15	14	20	1.81
63649--63690	18	2.3	18	95	0	75	21	16	28	33	1.95
63977--64001	12	2.1	12	100	0	50	44	24	0	32	1.54
68234--68258	12	2.1	12	100	0	50	44	24	0	32	1.54
78702--78939	52	4.6	52	83	2	282	33	23	16	26	1.96
93318--93361	22	2.0	22	90	0	70	22	27	18	31	1.97
105801--105856	28	2.1	27	84	12	73	60	5	19	14	1.53
110671--111342	51	13.3	51	90	1	1039	29	22	15	32	1.95
117539--117592	21	2.6	21	90	0	81	37	25	11	25	1.89
118173--118215	21	2.0	21	100	0	86	53	13	9	23	1.69
118338--118656	51	6.3	51	89	0	449	29	23	13	33	1.93
120489--120549	19	3.2	19	83	4	86	36	11	18	34	1.86
120552--120775	86	2.6	87	84	6	285	34	12	15	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124730--125013	43	6.6	42	83	5	329	35	11	25	27	1.91
124730--125004	129	2.1	129	88	2	410	36	11	25	27	1.90
124913--125068	42	3.7	42	82	7	136	33	10	28	27	1.90
143349--143385	15	2.4	15	90	4	56	72	0	27	0	0.84
144200--144356	77	2.0	77	100	0	314	31	21	31	15	1.94
145951--146032	32	2.5	32	94	5	139	25	45	10	18	1.82
147533--147557	12	2.1	12	100	0	50	60	16	0	24	1.36
147692--147734	20	2.2	20	91	4	70	55	9	0	34	1.32
147755--147816	19	3.2	20	81	6	67	53	3	0	43	1.17
147751--147790	10	4.0	10	84	12	55	52	2	0	45	1.14
147760--147823	19	3.2	21	80	8	57	54	6	0	39	1.26
155441--155474	15	2.3	15	94	0	59	17	8	0	73	1.08
161609--161669	26	2.3	26	77	0	68	26	18	19	36	1.94
172856--172917	26	2.4	26	84	10	90	32	19	14	33	1.92
175901--176008	50	2.1	50	94	1	189	47	12	15	24	1.81
179128--179169	22	1.9	22	90	0	66	26	16	21	35	1.94
190440--190588	58	2.6	58	83	2	165	29	14	22	34	1.93
190499--190583	29	2.9	30	67	18	79	27	12	23	36	1.91
190499--190614	58	2.0	58	88	6	173	29	13	23	33	1.93
190507--190630	58	2.1	58	83	5	153	32	13	23	30	1.93
190741--190801	28	2.2	28	96	0	113	24	16	24	34	1.95
193401--193425	11	2.3	11	100	0	50	24	0	12	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216314--216503	52	3.7	52	90	0	299	24	15	25	33	1.95
216340--216422	26	3.2	26	61	19	64	25	13	26	34	1.93
220817--220870	24	2.2	24	83	3	63	42	18	18	20	1.89
220824--220872	24	2.0	24	88	0	71	38	16	24	20	1.92
221483--221530	25	1.9	25	91	0	78	54	2	0	43	1.12
230909--230978	19	3.7	19	88	3	97	34	22	20	22	1.97
234021--234094	21	3.4	21	75	23	80	37	31	6	24	1.81
233997--234099	45	2.3	45	93	0	170	38	29	5	26	1.79
233997--234077	24	3.5	23	76	21	89	39	29	6	24	1.80
234668--234852	52	3.6	52	87	1	219	34	23	15	26	1.94
235421--235459	18	2.2	18	85	0	51	43	20	15	20	1.88
246724--246800	37	2.1	37	85	0	100	23	18	28	29	1.97
247663--247709	16	3.0	16	84	9	53	72	0	6	21	1.07
247684--247722	3	12.7	3	94	5	69	66	0	0	33	0.92
269149--269198	3	16.7	3	76	15	50	0	36	0	64	0.94
269161--269198	15	2.5	15	95	0	67	0	36	0	63	0.95
272900--272956	26	2.2	26	90	0	87	45	21	14	19	1.85
277187--277221	18	1.9	18	88	0	52	0	34	0	65	0.93
297463--297504	21	2.0	22	85	4	59	11	19	4	64	1.44
317554--317605	24	2.1	24	82	3	59	75	1	9	13	1.14
323217--323256	12	3.2	13	77	22	50	75	0	10	15	1.05
340930--340975	23	1.9	23	82	8	56	69	0	28	2	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347675--347726	21	2.5	21	83	0	77	21	3	23	51	1.63
347782--347863	21	3.9	21	87	3	112	37	18	17	26	1.92
361731--362075	108	3.2	107	86	2	467	25	19	19	35	1.95
365325--365420	27	3.3	30	75	12	101	25	4	12	58	1.52
365346--365492	59	2.5	57	83	5	186	23	9	11	55	1.65
368053--368110	20	2.9	20	84	0	71	10	29	20	39	1.86

Tables:   1

The End!