Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006646.1 Kokia drynarioides strain JFW-HI SEQ_121237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6292
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3605 original size:23 final size:23

Alignment explanation


    Indices: 3554--3605  Score: 61
    Period size: 24  Copynumber: 2.2  Consensus size: 23

       3544 AGCATTATTC

                       *           
       3554 GTGAACATGTTTAATTATATGTT
          1 GTGAACATGTTCAATTATATGTT

                          *          
       3577 GATGAACATGTTCATTTA-ATGTTT
          1 G-TGAACATGTTCAATTATATG-TT

                 
       3601 GTGAA
          1 GTGAA

       3606 TATTAAACTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  23    8  0.32
  24   17  0.68

ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44


Consensus pattern (23 bp):   
GTGAACATGTTCAATTATATGTT

Found at i:3648 original size:28 final size:27

Alignment explanation


    Indices: 3615--3668  Score: 81
    Period size: 28  Copynumber: 2.0  Consensus size: 27

       3605 ATATTAAACT

                     *      *           
       3615 AACGAACATGAACACATAATTTTAAATA
          1 AACGAACATAAACA-AAAATTTTAAATA

                                      
       3643 AACGAACATAAACAAAAATTTTAAAT
          1 AACGAACATAAACAAAAATTTTAAAT

       3669 TCTTAACGAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  27   11  0.46
  28   13  0.54

ACGTcount: A:0.57, C:0.13, G:0.06, T:0.24


Consensus pattern (27 bp):   
AACGAACATAAACAAAAATTTTAAATA
Done.