Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006655.1 Kokia drynarioides strain JFW-HI SEQ_121246, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15257
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34


Found at i:2041 original size:10 final size:10

Alignment explanation


    Indices: 2026--2052  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

       2016 CTCACAAAAA

                      
       2026 ATATATAAAT
          1 ATATATAAAT

                      
       2036 ATATATAAAT
          1 ATATATAAAT

                   
       2046 ATATATA
          1 ATATATA

       2053 TTTAAATACA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (10 bp):   
ATATATAAAT

Found at i:4159 original size:24 final size:23

Alignment explanation


    Indices: 4127--4172  Score: 65
    Period size: 24  Copynumber: 2.0  Consensus size: 23

       4117 ACCGGCCCGA

                                    
       4127 ATTTATAATAATAATTTTATTTTT
          1 ATTTATAATAATAATTTT-TTTTT

                *     *           
       4151 ATTTTTAATACTAATTTTTTTT
          1 ATTTATAATAATAATTTTTTTT

       4173 GCTTGTAATA


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  23    4  0.20
  24   16  0.80

ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65


Consensus pattern (23 bp):   
ATTTATAATAATAATTTTTTTTT
Done.