Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006657.1 Kokia drynarioides strain JFW-HI SEQ_121249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2058
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35


Found at i:1226 original size:34 final size:33

Alignment explanation


    Indices: 1183--1251  Score: 95
    Period size: 34  Copynumber: 2.1  Consensus size: 33

       1173 ATAATATGAA

                       *              *        
       1183 AGGTTAAGAAATAT-GAAAGGTTAAAGGTCAAGGG
          1 AGGTTAAGAAAGATGGAAA-GTTAAAAGT-AAGGG

                                             
       1217 AGGTTAAGAAAGATGGAAAGTTAAAAGTAAGGG
          1 AGGTTAAGAAAGATGGAAAGTTAAAAGTAAGGG

              
       1250 AG
          1 AG

       1252 ATGAAAGGTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 3
        0.86            0.05        0.08

Matches are distributed among these distances:
  33    7  0.22
  34   21  0.66
  35    4  0.12

ACGTcount: A:0.46, C:0.01, G:0.33, T:0.19


Consensus pattern (33 bp):   
AGGTTAAGAAAGATGGAAAGTTAAAAGTAAGGG
Done.