Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006660.1 Kokia drynarioides strain JFW-HI SEQ_121252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7638
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31


Found at i:3905 original size:7 final size:7

Alignment explanation


    Indices: 3893--3920  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

       3883 GCAACACAGC

                   
       3893 CCCGTTT
          1 CCCGTTT

                   
       3900 CCCGTTT
          1 CCCGTTT

                   
       3907 CCCGTTT
          1 CCCGTTT

                   
       3914 CCCGTTT
          1 CCCGTTT

       3921 AAGGGAAAAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.00, C:0.43, G:0.14, T:0.43


Consensus pattern (7 bp):   
CCCGTTT

Done.