Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006662.1 Kokia drynarioides strain JFW-HI SEQ_121254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2845
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40


Found at i:1563 original size:23 final size:24

Alignment explanation


    Indices: 1520--1564  Score: 74
    Period size: 23  Copynumber: 1.9  Consensus size: 24

       1510 ACATATTTAA

                        *           
       1520 TGTTTTAATTTATTTTAAATAATG
          1 TGTTTTAATTTAATTTAAATAATG

                                  
       1544 TGTTTTAA-TTAATTTAAATAA
          1 TGTTTTAATTTAATTTAAATAA

       1565 CTTTTTAATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  23   12  0.60
  24    8  0.40

ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56


Consensus pattern (24 bp):   
TGTTTTAATTTAATTTAAATAATG
Done.