Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006663.1 Kokia drynarioides strain JFW-HI SEQ_121255, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4822
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28


Found at i:3669 original size:62 final size:63

Alignment explanation


    Indices: 3552--3687  Score: 147
    Period size: 63  Copynumber: 2.2  Consensus size: 63

       3542 AAAAAATGAT

                               *             * *      *                     
       3552 GAAAAG-AAAAA-AAGATCGAGATGAAAACCCGTAGAGGGCATCTTGAAACCTAAAAAAAAAAA
          1 GAAAAGAAAAAAGAAGATCAAGATGAAAACCCGCACAGGGCAACTTGAAA-CTAAAAAAAAAAA

                                           *                           *  * 
       3614 GAAAAGAAAAAAGAAG-TCAAGATGAAAACCTGCACAGGGCAACTTGAAA-TGAAAAAATAATA
          1 GAAAAGAAAAAAGAAGATCAAGATGAAAACCCGCACAGGGCAACTTGAAACT-AAAAAAAAAAA

                 *       
       3676 -AAAATAAAAAAG
          1 GAAAAGAAAAAAG

       3688 GTTTTACGCT


Statistics
Matches: 63,  Mismatches: 8, Indels: 7
        0.81            0.10        0.09

Matches are distributed among these distances:
  61   12  0.19
  62   15  0.24
  63   33  0.52
  64    3  0.05

ACGTcount: A:0.59, C:0.11, G:0.18, T:0.12


Consensus pattern (63 bp):   
GAAAAGAAAAAAGAAGATCAAGATGAAAACCCGCACAGGGCAACTTGAAACTAAAAAAAAAAA
Done.