Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006669.1 Kokia drynarioides strain JFW-HI SEQ_121262, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1741
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:1171 original size:27 final size:26

Alignment explanation


    Indices: 1126--1180  Score: 83
    Period size: 27  Copynumber: 2.1  Consensus size: 26

       1116 TTAAAGAAAA

                                  *   
       1126 AAGATGAGAAAAAGTGGTAGTGGATG
          1 AAGATGAGAAAAAGTGGTAGTGAATG

                       *               
       1152 AAGATGAGGAATAAGTGGTAGTGAATG
          1 AAGATGA-GAAAAAGTGGTAGTGAATG

              
       1179 AA
          1 AA

       1181 AAAGGAAGAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  26    7  0.27
  27   19  0.73

ACGTcount: A:0.44, C:0.00, G:0.36, T:0.20


Consensus pattern (26 bp):   
AAGATGAGAAAAAGTGGTAGTGAATG
Done.