Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006671.1 Kokia drynarioides strain JFW-HI SEQ_121264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2566
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34


Found at i:1422 original size:41 final size:42

Alignment explanation


    Indices: 1365--1460  Score: 133
    Period size: 42  Copynumber: 2.3  Consensus size: 42

       1355 AGAATGGTGT

                                  *                    
       1365 AGACTTCTACCT-ATACTTGAGTC-GTACTACCGATACAAGTG
          1 AGACTTCTA-CTGATACTTGAGGCAGTACTACCGATACAAGTG

                                       *  **          
       1406 AGACTTCTACTGATACTTGAGGCAGTATTATTGATACAAGTG
          1 AGACTTCTACTGATACTTGAGGCAGTACTACCGATACAAGTG

                         
       1448 AGACTTCTACTGA
          1 AGACTTCTACTGA

       1461 AACATGTCAT


Statistics
Matches: 49,  Mismatches: 4, Indels: 3
        0.88            0.07        0.05

Matches are distributed among these distances:
  40    2  0.04
  41   19  0.39
  42   28  0.57

ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Consensus pattern (42 bp):   
AGACTTCTACTGATACTTGAGGCAGTACTACCGATACAAGTG

Done.