Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006676.1 Kokia drynarioides strain JFW-HI SEQ_121269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20579
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:4307 original size:19 final size:19

Alignment explanation


    Indices: 4283--4336  Score: 56
    Period size: 20  Copynumber: 2.8  Consensus size: 19

       4273 TTATAAAAAA

                               
       4283 TAAAAAATATTTTCTTTTC
          1 TAAAAAATATTTTCTTTTC

                       *         
       4302 TAAAAAAGTA-ATTCATTTTC
          1 TAAAAAA-TATTTTC-TTTTC

            *     *        
       4322 CAAAAATTATTTTCT
          1 TAAAAAATATTTTCT

       4337 AGAAACCATT


Statistics
Matches: 28,  Mismatches: 4, Indels: 6
        0.74            0.11        0.16

Matches are distributed among these distances:
  19   13  0.46
  20   15  0.54

ACGTcount: A:0.41, C:0.11, G:0.02, T:0.46


Consensus pattern (19 bp):   
TAAAAAATATTTTCTTTTC

Found at i:12255 original size:19 final size:21

Alignment explanation


    Indices: 12231--12269  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      12221 CCAGCAACCA

                                 
      12231 TTTC-TTTTCT-TCTTTTCTC
          1 TTTCTTTTTCTCTCTTTTCTC

                                
      12250 TTTCTTTTTCTCTCTTTTCT
          1 TTTCTTTTTCTCTCTTTTCT

      12270 TCTTAAATTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    4  0.22
  20    6  0.33
  21    8  0.44

ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74


Consensus pattern (21 bp):   
TTTCTTTTTCTCTCTTTTCTC

Done.