Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006678.1 Kokia drynarioides strain JFW-HI SEQ_121272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7672
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3278 original size:20 final size:20

Alignment explanation


    Indices: 3241--3280  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       3231 AAATTTAAAA

                                
       3241 AATAATAATATTATTATATT
          1 AATAATAATATTATTATATT

                      *          
       3261 AATATATAATTTTA-TATATT
          1 AATA-ATAATATTATTATATT

       3281 TTTAAAGAGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20   10  0.56
  21    8  0.44

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (20 bp):   
AATAATAATATTATTATATT

Found at i:7486 original size:31 final size:30

Alignment explanation


    Indices: 7421--7492  Score: 83
    Period size: 30  Copynumber: 2.4  Consensus size: 30

       7411 GTCACATTTA

                          *               
       7421 ACAAAACAGTCACTCAACTTTGAAAATGTG
          1 ACAAAACAGTCACTAAACTTTGAAAATGTG

                        *    *              
       7451 ACAAAACAGTCATTAAAGTTATCGAAAA-GTG
          1 ACAAAACAGTCACTAAACTT-T-GAAAATGTG

                  *    
       7482 ACAAAATAGTC
          1 ACAAAACAGTC

       7493 CACTTGTTGT


Statistics
Matches: 36,  Mismatches: 4, Indels: 3
        0.84            0.09        0.07

Matches are distributed among these distances:
  30   17  0.47
  31   14  0.39
  32    5  0.14

ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22


Consensus pattern (30 bp):   
ACAAAACAGTCACTAAACTTTGAAAATGTG
Done.