Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006679.1 Kokia drynarioides strain JFW-HI SEQ_121273, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7666
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34


Found at i:7077 original size:6 final size:6

Alignment explanation


    Indices: 7042--7078  Score: 56
    Period size: 6  Copynumber: 6.2  Consensus size: 6

       7032 GTAATGAATA

                 *      *                              
       7042 ATGTTA ATGTTA ATGTTT ATGTTT ATGTTT ATGTTT A
          1 ATGTTT ATGTTT ATGTTT ATGTTT ATGTTT ATGTTT A

       7079 CATTTCATCA


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.24, C:0.00, G:0.16, T:0.59


Consensus pattern (6 bp):   
ATGTTT

Done.