Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006695.1 Kokia drynarioides strain JFW-HI SEQ_121289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6231
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31


Found at i:5068 original size:59 final size:59

Alignment explanation


    Indices: 4997--5115  Score: 220
    Period size: 59  Copynumber: 2.0  Consensus size: 59

       4987 ACAGCTATAA

                                                        *              
       4997 ATATAAAATTAAAAATTCCTAAAAGGGGTCCCCACTTTAAAATGTTCGAAAAAGTCTGC
          1 ATATAAAATTAAAAATTCCTAAAAGGGGTCCCCACTTTAAAATGGTCGAAAAAGTCTGC

                             *                                         
       5056 ATATAAAATTAAAAATTTCTAAAAGGGGTCCCCACTTTAAAATGGTCGAAAAAGTCTGC
          1 ATATAAAATTAAAAATTCCTAAAAGGGGTCCCCACTTTAAAATGGTCGAAAAAGTCTGC

             
       5115 A
          1 A

       5116 GCATTGTCTT


Statistics
Matches: 58,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  59   58  1.00

ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27


Consensus pattern (59 bp):   
ATATAAAATTAAAAATTCCTAAAAGGGGTCCCCACTTTAAAATGGTCGAAAAAGTCTGC
Done.