Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006698.1 Kokia drynarioides strain JFW-HI SEQ_121293, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2659
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39


Found at i:681 original size:7 final size:6

Alignment explanation


    Indices: 631--705  Score: 60
    Period size: 6  Copynumber: 11.5  Consensus size: 6

        621 AATTAGTACA

                                   *      *                             
        631 TTTATT TTTATT TTTATT TTCATT TTCATT TTTAGTTTT TTTATT TATTATGT
          1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTA---TT TTTATT T-TTAT-T

            *             *          
        684 ATTATT TTTATT CTTATGT TTT
          1 TTTATT TTTATT TTTAT-T TTT

        706 TTTAGTTGTT


Statistics
Matches: 57,  Mismatches: 6, Indels: 11
        0.77            0.08        0.15

Matches are distributed among these distances:
   6   39  0.68
   7   11  0.19
   8    1  0.02
   9    6  0.11

ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75


Consensus pattern (6 bp):   
TTTATT

Found at i:1111 original size:13 final size:13

Alignment explanation


    Indices: 1093--1119  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1083 AATCTTTAAG

                         
       1093 ATATGAGAGAATC
          1 ATATGAGAGAATC

                         
       1106 ATATGAGAGAATC
          1 ATATGAGAGAATC

             
       1119 A
          1 A

       1120 AGCATGATAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.48, C:0.07, G:0.22, T:0.22


Consensus pattern (13 bp):   
ATATGAGAGAATC
Done.