Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006699.1 Kokia drynarioides strain JFW-HI SEQ_121294, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1703
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32


Found at i:103 original size:6 final size:6

Alignment explanation


    Indices: 84--158  Score: 60
    Period size: 6  Copynumber: 11.5  Consensus size: 6

         74 AACAACTAAA

                      *               *                           
         84 AAAACAT AAGAAT AAAAAT AATACAT AATAAAT AAAAAAACT AAAAAT
          1 AAAA-AT AAAAAT AAAAAT AA-AAAT AA-AAAT --AAAAA-T AAAAAT

            *      *                       
        132 GAAAAT GAAAAT AAAAAT AAAAAT AAA
          1 AAAAAT AAAAAT AAAAAT AAAAAT AAA

        159 TGTACTAATT


Statistics
Matches: 58,  Mismatches: 6, Indels: 9
        0.79            0.08        0.12

Matches are distributed among these distances:
   6   35  0.60
   7   17  0.29
   8    3  0.05
   9    3  0.05

ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17


Consensus pattern (6 bp):   
AAAAAT

Done.