Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006703.1 Kokia drynarioides strain JFW-HI SEQ_121299, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3163
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:3090 original size:17 final size:17

Alignment explanation


    Indices: 3065--3107  Score: 50
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       3055 ATGCATCTCA

                          *  
       3065 TTTAATTGTCATTGTAT
          1 TTTAATTGTCATTGCAT

                *     *      
       3082 TTTAGTTGTCGTTGCAT
          1 TTTAATTGTCATTGCAT

                *    
       3099 TTTACTTGT
          1 TTTAATTGT

       3108 TAGTTCATTT


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  17   22  1.00

ACGTcount: A:0.16, C:0.09, G:0.16, T:0.58


Consensus pattern (17 bp):   
TTTAATTGTCATTGCAT
Done.