Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006709.1 Kokia drynarioides strain JFW-HI SEQ_121305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4047
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Found at i:2366 original size:233 final size:233
Alignment explanation
Indices: 1959--2420 Score: 906
Period size: 233 Copynumber: 2.0 Consensus size: 233
1949 AATATCTCCT
1959 TTTATCAGATTGCAAATTGCACATCTGTACTGTTTATTTTAACTTGTCTTGATTCCCTATGCAAT
1 TTTATCAGATTGCAAATTGCACATCTGTACTGTTTATTTTAACTTGTCTTGATTCCCTATGCAAT
2024 AATAATTACCATTTTCGCTTGCATTCTTCAATTTAATTTTTCTTTGCTTATCTGATGTTTCTTTG
66 AATAATTACCATTTTCGCTTGCATTCTTCAATTTAATTTTTCTTTGCTTATCTGATGTTTCTTTG
2089 ACATTTGGTTCTATATTTTCTTCTTTGTGGGAACTCTTGGAGTTTTCTAATATTGCTTATACTGG
131 ACATTTGGTTCTATATTTTCTTCTTTGTGGGAACTCTTGGAGTTTTCTAATATTGCTTATACTGG
*
2154 TAGCATAGCAACTTAATTACTCTTTGATGACTGTACTG
196 TAGCATAACAACTTAATTACTCTTTGATGACTGTACTG
2192 TTTATCAGATTGCAAATTGCACATCTGTACTGTTTATTTTAACTTGTCTTGATTCCCTATGCAAT
1 TTTATCAGATTGCAAATTGCACATCTGTACTGTTTATTTTAACTTGTCTTGATTCCCTATGCAAT
*
2257 AATAATTTCCATTTTCGCTTGCATTCTTCAATTTAATTTTTCTTTGCTTATCTGATGTTTCTTTG
66 AATAATTACCATTTTCGCTTGCATTCTTCAATTTAATTTTTCTTTGCTTATCTGATGTTTCTTTG
2322 ACATTTGGTTCTATATTTTCTTCTTTGTGGGAACTCTTGGAGTTTTCTAATATTGCTTATACTGG
131 ACATTTGGTTCTATATTTTCTTCTTTGTGGGAACTCTTGGAGTTTTCTAATATTGCTTATACTGG
2387 TAGCATAACAACTTAATTACTCTTTGATGACTGT
196 TAGCATAACAACTTAATTACTCTTTGATGACTGT
2421 CTTCAATTTA
Statistics
Matches: 227, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
233 227 1.00
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (233 bp):
TTTATCAGATTGCAAATTGCACATCTGTACTGTTTATTTTAACTTGTCTTGATTCCCTATGCAAT
AATAATTACCATTTTCGCTTGCATTCTTCAATTTAATTTTTCTTTGCTTATCTGATGTTTCTTTG
ACATTTGGTTCTATATTTTCTTCTTTGTGGGAACTCTTGGAGTTTTCTAATATTGCTTATACTGG
TAGCATAACAACTTAATTACTCTTTGATGACTGTACTG
Done.