Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006715.1 Kokia drynarioides strain JFW-HI SEQ_121311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3930
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34


Found at i:954 original size:3 final size:3

Alignment explanation


    Indices: 946--970  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        936 TGGAATATGG

                                             
        946 GGT GGT GGT GGT GGT GGT GGT GGT G
          1 GGT GGT GGT GGT GGT GGT GGT GGT G

        971 TTTTCTTTAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32


Consensus pattern (3 bp):   
GGT

Found at i:2273 original size:2 final size:2

Alignment explanation


    Indices: 2266--2305  Score: 64
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       2256 AACATATTAA

                                                         *               
       2266 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A- AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       2306 ATTTGAATAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   34  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.