Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000672.1 Kokia drynarioides strain JFW-HI SEQ_111662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 728

Length: 1214
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26


Found at i:75 original size:3 final size:3

Alignment explanation


    Indices: 60--96  Score: 65
    Period size: 3  Copynumber: 12.3  Consensus size: 3

         50 CCTTCAAATT

                      *                                      
         60 TAA TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA TAA T
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T

         97 TTTACTTAGA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35


Consensus pattern (3 bp):   
TAA

Done.