Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006729.1 Kokia drynarioides strain JFW-HI SEQ_121327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2422
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32


Found at i:2302 original size:31 final size:30

Alignment explanation


    Indices: 2258--2331  Score: 80
    Period size: 31  Copynumber: 2.4  Consensus size: 30

       2248 ATTGTAAAAA

                                          *  
       2258 TAATCA-TCTAACTA-TATATTTTGTTCTATTT
          1 TAATCACTC-AACTATTA-ATTTTGTTC-AATT

              *                   *       
       2289 TAGTCACTCAACTATTAATTTTTTTCAATT
          1 TAATCACTCAACTATTAATTTTGTTCAATT

                         
       2319 TAATCACTCAACT
          1 TAATCACTCAACT

       2332 TTTCAAAATC


Statistics
Matches: 37,  Mismatches: 4, Indels: 5
        0.80            0.09        0.11

Matches are distributed among these distances:
  30   15  0.41
  31   18  0.49
  32    4  0.11

ACGTcount: A:0.31, C:0.18, G:0.03, T:0.49


Consensus pattern (30 bp):   
TAATCACTCAACTATTAATTTTGTTCAATT
Done.