Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006734.1 Kokia drynarioides strain JFW-HI SEQ_121332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5791
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34


Found at i:939 original size:3 final size:3

Alignment explanation


    Indices: 931--971  Score: 82
    Period size: 3  Copynumber: 13.7  Consensus size: 3

        921 CTTAAGGTAA

                                                                  
        931 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA

        972 ACATGACATG


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32


Consensus pattern (3 bp):   
CAT

Done.