Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006735.1 Kokia drynarioides strain JFW-HI SEQ_121333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5857
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.40


Found at i:4459 original size:59 final size:58

Alignment explanation


    Indices: 4362--4528  Score: 176
    Period size: 59  Copynumber: 2.8  Consensus size: 58

       4352 TAAATATAGG

                      *            *         *                            
       4362 TACCAAATTGAATCTAAAAGAAAGTTTAGGTACTAAATTAGGAAAAAAT-TCCAAGTTC-AA
          1 TACCAAATTGGATC-AAAA-AAAATTTAGGTACCAAATTA-GAAAAAATGT-CAAGTTCGAA

              *         *  *                                  *         
       4422 GTCCCAAATTGGGTCCAAAAAAATTTAGGTACCAAATTAGAAAAAAGTGTTAAGTTCGAA
          1 -TACCAAATTGGATCAAAAAAAATTTAGGTACCAAATTAGAAAAAA-TGTCAAGTTCGAA

                                      **                   
       4482 TACCAAATTGGATCAAAAAAAATTTAAATACCAAATTATGAAAAAAT
          1 TACCAAATTGGATCAAAAAAAATTTAGGTACCAAATTA-GAAAAAAT

       4529 ATATCAAATT


Statistics
Matches: 90,  Mismatches: 12, Indels: 10
        0.80            0.11        0.09

Matches are distributed among these distances:
  58    7  0.08
  59   59  0.66
  60   13  0.14
  61   11  0.12

ACGTcount: A:0.49, C:0.12, G:0.13, T:0.26


Consensus pattern (58 bp):   
TACCAAATTGGATCAAAAAAAATTTAGGTACCAAATTAGAAAAAATGTCAAGTTCGAA
Done.