Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006743.1 Kokia drynarioides strain JFW-HI SEQ_121341, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2538
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35


Found at i:110 original size:22 final size:21

Alignment explanation


    Indices: 83--124  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         73 TGGTTTGATA

                                  
         83 AAAAATTCAAAATAAATAATTT
          1 AAAAATTC-AAATAAATAATTT

                          *     
        105 AAAAATTCAAATAATTAATT
          1 AAAAATTCAAATAAATAATT

        125 ATAATTAACC


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   11  0.58
  22    8  0.42

ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33


Consensus pattern (21 bp):   
AAAAATTCAAATAAATAATTT
Done.