Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006753.1 Kokia drynarioides strain JFW-HI SEQ_121351, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7249
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:4124 original size:30 final size:30

Alignment explanation


    Indices: 4090--4162  Score: 85
    Period size: 30  Copynumber: 2.5  Consensus size: 30

       4080 CCATTTTTGA

                            *             
       4090 AAAATTACAATAAATGTCCTCAAATTTAGT
          1 AAAATTACAATAAATGCCCTCAAATTTAGT

                    **          *  *      
       4120 AAAATTACGGTAAATGCCCTTAATTTTAGT
          1 AAAATTACAATAAATGCCCTCAAATTTAGT

                  *       
       4150 -AAATTGCAATAAA
          1 AAAATTACAATAAA

       4163 GCTTTTATAC


Statistics
Matches: 35,  Mismatches: 8, Indels: 1
        0.80            0.18        0.02

Matches are distributed among these distances:
  29   10  0.29
  30   25  0.71

ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33


Consensus pattern (30 bp):   
AAAATTACAATAAATGCCCTCAAATTTAGT
Done.