Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006755.1 Kokia drynarioides strain JFW-HI SEQ_121353, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5049
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35


Found at i:485 original size:30 final size:30

Alignment explanation


    Indices: 449--511  Score: 81
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        439 TTTATTGCAA

                            *             
        449 TTTACTAAAATTAAGGGCATTTACCGTAAT
          1 TTTACTAAAATTAAGGACATTTACCGTAAT

                     *  *          **     
        479 TTTACTAAATTTGAGGACATTTATTGTAAT
          1 TTTACTAAAATTAAGGACATTTACCGTAAT

               
        509 TTT
          1 TTT

        512 TCAAAAATGG


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44


Consensus pattern (30 bp):   
TTTACTAAAATTAAGGACATTTACCGTAAT
Done.