Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006758.1 Kokia drynarioides strain JFW-HI SEQ_121356, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5894
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37


Found at i:2395 original size:23 final size:23

Alignment explanation


    Indices: 2364--2413  Score: 57
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       2354 TAATACTACT

                *                   
       2364 TTAATATAAATAT-TAAAATAATG
          1 TTAAGATAAATATATAAAA-AATG

                     *            *
       2387 TTAAGATAATTATATAAAAAATT
          1 TTAAGATAAATATATAAAAAATG

                
       2410 TTAA
          1 TTAA

       2414 TAAATAAAAC


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  23   18  0.78
  24    5  0.22

ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40


Consensus pattern (23 bp):   
TTAAGATAAATATATAAAAAATG
Done.