genome.fa.s6761.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006761.1 Kokia drynarioides strain JFW-HI SEQ_121359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112341

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87--203	60	2.0	60	87	0	171	37	16	0	45	1.53
4418--4537	43	2.9	42	87	5	163	23	10	24	41	1.86
4883--4998	58	2.0	58	100	0	232	18	13	27	39	1.89
12569--12606	18	2.2	18	86	13	53	55	0	5	39	1.23
14340--14381	19	2.2	19	83	8	50	26	14	2	57	1.50
17583--17615	17	1.9	18	88	11	52	45	0	12	42	1.41
19365--19402	19	2.0	20	89	5	60	52	5	0	42	1.24
37943--37972	13	2.2	14	94	5	53	0	0	10	90	0.47
37947--37976	8	3.9	8	95	4	53	0	0	10	90	0.47
40153--40178	3	8.7	3	100	0	52	0	30	0	69	0.89
43926--43973	23	2.0	24	92	4	80	33	14	29	22	1.94
44672--44721	20	2.5	21	84	12	61	48	0	12	40	1.40
54475--54688	107	2.0	107	94	0	374	29	12	11	46	1.76
58581--58658	40	2.0	40	100	0	156	46	11	5	37	1.62
58936--58977	14	2.9	15	85	7	59	59	0	9	30	1.29
60743--60789	19	2.5	19	85	0	67	68	2	0	29	1.02
62870--62899	15	2.0	15	100	0	60	40	13	6	40	1.71
81044--81086	18	2.4	19	84	11	63	44	0	0	55	0.99
82404--82451	14	3.2	14	75	16	51	83	2	8	6	0.88
84397--84444	24	2.0	24	87	0	69	39	27	8	25	1.84
96378--96445	34	2.0	34	88	2	102	38	5	16	39	1.73
96623--96671	17	2.9	17	88	8	73	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97718--97795	35	2.3	34	90	2	120	17	17	30	33	1.94
97721--97787	17	3.9	17	81	11	91	17	17	29	34	1.94
99275--99369	17	5.7	16	72	18	61	15	18	31	33	1.93
99303--99352	18	2.8	18	87	3	75	22	16	28	34	1.95
99312--99377	17	3.8	17	76	9	62	21	18	25	34	1.96
103608--103668	30	2.0	30	100	0	122	26	26	26	21	1.99
103829--103948	53	2.2	54	89	1	179	22	31	20	25	1.98
106775--106848	19	3.2	25	67	29	63	50	0	9	40	1.35
106772--106862	45	2.0	44	89	2	137	50	0	8	40	1.33
106830--106863	17	1.9	18	88	5	52	52	0	5	41	1.25
110098--110159	20	3.0	20	88	2	97	14	14	25	45	1.83
110095--110157	27	2.3	27	83	5	74	15	15	26	41	1.88

Tables:   1

The End!