Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006768.1 Kokia drynarioides strain JFW-HI SEQ_121366, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2502
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35


Found at i:1377 original size:17 final size:18

Alignment explanation


    Indices: 1343--1378  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1333 AAAATTATCA

                              
       1343 AAAATTTAAAATACATAG
          1 AAAATTTAAAATACATAG

                   *          
       1361 AAAATTTCAAA-ACATAG
          1 AAAATTTAAAATACATAG

             
       1378 A
          1 A

       1379 TAAAGTGAGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    7  0.41
  18   10  0.59

ACGTcount: A:0.61, C:0.08, G:0.06, T:0.25


Consensus pattern (18 bp):   
AAAATTTAAAATACATAG
Done.