Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006770.1 Kokia drynarioides strain JFW-HI SEQ_121368, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1860
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:1763 original size:21 final size:21

Alignment explanation


    Indices: 1737--1779  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1727 ATGAGTGTAT

                                 
       1737 TAATAATTGTTTGAGACAGTG
          1 TAATAATTGTTTGAGACAGTG

                                 
       1758 TAATAATTGTTTGAGACAGTG
          1 TAATAATTGTTTGAGACAGTG

             
       1779 T
          1 T

       1780 GTTTGTGTGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.33, C:0.05, G:0.23, T:0.40


Consensus pattern (21 bp):   
TAATAATTGTTTGAGACAGTG

Done.